RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 POLA1P09884 1462 aaPredicted RBP5.82□□□□□ -1.48
MCF2-202ENST00000370573 THOC2Q8NI27 1593 aaKnown RBP5.82□□□□□ -1.48
MCF2-202ENST00000370573 RAD54L2Q9Y4B4 1467 aa5.82□□□□□ -1.48
MCF2-202ENST00000370573 WDR62O43379 1518 aa5.82□□□□□ -1.48
MCF2-202ENST00000370573 NUTM2FA1L443 756 aa5.81□□□□□ -1.48
MCF2-202ENST00000370573 NPDC1Q9NQX5 325 aaPredicted RBP5.81□□□□□ -1.48
MCF2-202ENST00000370573 FAM198AQ9UFP1 575 aa5.81□□□□□ -1.48
MCF2-202ENST00000370573 C3orf80F5H4A9 247 aa5.81□□□□□ -1.48
MCF2-202ENST00000370573 PRSS12P56730 875 aa5.81□□□□□ -1.48
MCF2-202ENST00000370573 RBM26Q5T8P6 1007 aaKnown RBP5.81□□□□□ -1.48
MCF2-202ENST00000370573 WNT2BQ93097 391 aa5.81□□□□□ -1.48
MCF2-202ENST00000370573 CUX2O14529 1486 aa5.8□□□□□ -1.48
MCF2-202ENST00000370573 TESPA1A2RU30 521 aaPredicted RBP5.79□□□□□ -1.48
MCF2-202ENST00000370573 PACS2Q86VP3 889 aa5.79□□□□□ -1.48
MCF2-202ENST00000370573 LOC105371045A0A1W2PR82 267 aa5.79□□□□□ -1.48
MCF2-202ENST00000370573 C14orf37Q86TY3 774 aa5.79□□□□□ -1.48
MCF2-202ENST00000370573 HOMEZQ8IX15 550 aa5.79□□□□□ -1.48
MCF2-202ENST00000370573 PADI6Q6TGC4 694 aa5.78□□□□□ -1.48
MCF2-202ENST00000370573 ZFRQ96KR1 1074 aaKnown RBP5.78□□□□□ -1.48
MCF2-202ENST00000370573 ABCA10Q8WWZ4 1543 aa5.78□□□□□ -1.48
MCF2-202ENST00000370573 TARBP1Q13395 1621 aaKnown RBP5.78□□□□□ -1.48
MCF2-202ENST00000370573 BCAMP50895 628 aa5.78□□□□□ -1.48
MCF2-202ENST00000370573 CERKQ8TCT0 537 aa5.78□□□□□ -1.48
MCF2-202ENST00000370573 HCSTQ9UBK5 93 aa5.77□□□□□ -1.49
MCF2-202ENST00000370573 PNMA3Q9UL41 463 aa5.77□□□□□ -1.49
MCF2-202ENST00000370573 EEA1Q15075 1411 aa5.77□□□□□ -1.49
MCF2-202ENST00000370573 TDRD9Q8NDG6 1382 aaKnown RBP5.77□□□□□ -1.49
MCF2-202ENST00000370573 PTGDRQ13258 359 aa5.77□□□□□ -1.49
MCF2-202ENST00000370573 FAM161AQ3B820 660 aa5.77□□□□□ -1.49
MCF2-202ENST00000370573 THSD4Q6ZMP0 1018 aa5.77□□□□□ -1.49
MCF2-202ENST00000370573 NUDT18Q6ZVK8 323 aa5.77□□□□□ -1.49
MCF2-202ENST00000370573 ERICH6Q7L0X2 663 aa5.77□□□□□ -1.49
MCF2-202ENST00000370573 KIF27Q86VH2 1401 aa5.77□□□□□ -1.49
MCF2-202ENST00000370573 TATDN2Q93075 761 aa5.76□□□□□ -1.49
MCF2-202ENST00000370573 IGF1RP08069 1367 aa5.76□□□□□ -1.49
MCF2-202ENST00000370573 IFT140Q96RY7 1462 aa5.76□□□□□ -1.49
MCF2-202ENST00000370573 ONECUT3O60422 494 aaPredicted RBP5.76□□□□□ -1.49
MCF2-202ENST00000370573 FAM98CQ17RN3 349 aaKnown RBP5.76□□□□□ -1.49
MCF2-202ENST00000370573 ANKK1Q8NFD2 765 aa5.76□□□□□ -1.49
MCF2-202ENST00000370573 WDR97A6NE52 1622 aa5.76□□□□□ -1.49
MCF2-202ENST00000370573 ZNF608Q9ULD9 1512 aaPredicted RBP5.75□□□□□ -1.49
MCF2-202ENST00000370573 SMYD5Q6GMV2 418 aa5.75□□□□□ -1.49
MCF2-202ENST00000370573 LAPTM4BQ86VI4 370 aa5.75□□□□□ -1.49
MCF2-202ENST00000370573 AQRO60306 1485 aaKnown RBP eCLIP5.75□□□□□ -1.49
MCF2-202ENST00000370573 GAPVD1Q14C86 1478 aa5.74□□□□□ -1.49
MCF2-202ENST00000370573 ABCA5Q8WWZ7 1642 aa5.73□□□□□ -1.49
MCF2-202ENST00000370573 NBPF26B4DH59 902 aa5.73□□□□□ -1.49
MCF2-202ENST00000370573 SAMD7Q7Z3H4 446 aa5.73□□□□□ -1.49
MCF2-202ENST00000370573 SOWAHBA6NEL2 793 aa5.73□□□□□ -1.49
MCF2-202ENST00000370573 RNF40O75150 1001 aa5.73□□□□□ -1.49
MCF2-202ENST00000370573 FECHP22830 423 aa5.73□□□□□ -1.49
MCF2-202ENST00000370573 WBP1LQ9NX94 342 aa5.73□□□□□ -1.49
MCF2-202ENST00000370573 PRXQ9BXM0 1461 aa5.73□□□□□ -1.49
MCF2-202ENST00000370573 FCHSD2O94868 740 aa5.72□□□□□ -1.49
MCF2-202ENST00000370573 TTC13Q8NBP0 860 aa5.72□□□□□ -1.49
MCF2-202ENST00000370573 LRCH3Q96II8 777 aa5.72□□□□□ -1.49
MCF2-202ENST00000370573 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.72□□□□□ -1.49
MCF2-202ENST00000370573 RBM27Q9P2N5 1060 aaKnown RBP5.72□□□□□ -1.49
MCF2-202ENST00000370573 CARMIL1Q5VZK9 1371 aa5.72□□□□□ -1.49
MCF2-202ENST00000370573 RAPGEF2Q9Y4G8 1499 aa5.71□□□□□ -1.5
MCF2-202ENST00000370573 HPS5Q9UPZ3 1129 aa5.71□□□□□ -1.5
MCF2-202ENST00000370573 KIF21BO75037 1637 aa5.71□□□□□ -1.5
MCF2-202ENST00000370573 ERICH3Q5RHP9 1530 aa5.7□□□□□ -1.5
MCF2-202ENST00000370573 PLA2G2EQ9NZK7 142 aa5.7□□□□□ -1.5
MCF2-202ENST00000370573 EIF4G3O43432 1585 aaKnown RBP5.7□□□□□ -1.5
MCF2-202ENST00000370573 GRIN2BQ13224 1484 aa5.7□□□□□ -1.5
MCF2-202ENST00000370573 BRPF1P55201 1214 aaPredicted RBP5.7□□□□□ -1.5
MCF2-202ENST00000370573 GPIHBP1Q8IV16 184 aa5.7□□□□□ -1.5
MCF2-202ENST00000370573 EYA1Q99502 592 aa5.7□□□□□ -1.5
MCF2-202ENST00000370573 GOLGA3Q08378 1498 aa5.7□□□□□ -1.5
MCF2-202ENST00000370573 ADGRG1Q9Y653 693 aa5.69□□□□□ -1.5
MCF2-202ENST00000370573 PBRM1Q86U86 1689 aa5.69□□□□□ -1.5
MCF2-202ENST00000370573 GPR37O15354 613 aa5.69□□□□□ -1.5
MCF2-202ENST00000370573 UBTFP17480 764 aaKnown RBP5.69□□□□□ -1.5
MCF2-202ENST00000370573 HDGFP51858 240 aaKnown RBP5.69□□□□□ -1.5
MCF2-202ENST00000370573 HIC1Q14526 733 aa5.69□□□□□ -1.5
MCF2-202ENST00000370573 SWT1Q5T5J6 900 aaKnown RBP5.69□□□□□ -1.5
MCF2-202ENST00000370573 GNPATO15228 680 aa5.68□□□□□ -1.5
MCF2-202ENST00000370573 PPP4CP60510 307 aa5.68□□□□□ -1.5
MCF2-202ENST00000370573 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.68□□□□□ -1.5
MCF2-202ENST00000370573 TSR3Q9UJK0 312 aaKnown RBP5.68□□□□□ -1.5
MCF2-202ENST00000370573 TNIKQ9UKE5 1360 aa5.68□□□□□ -1.5
MCF2-202ENST00000370573 NLRP7Q8WX94 980 aa5.68□□□□□ -1.5
MCF2-202ENST00000370573 CUL7Q14999 1698 aa5.68□□□□□ -1.5
MCF2-202ENST00000370573 SNAPC4Q5SXM2 1469 aa5.68□□□□□ -1.5
MCF2-202ENST00000370573 RBM46Q8TBY0 533 aaKnown RBP5.67□□□□□ -1.5
MCF2-202ENST00000370573 FHAD1B1AJZ9 1412 aa5.67□□□□□ -1.5
MCF2-202ENST00000370573 LMOD2Q6P5Q4 547 aa5.67□□□□□ -1.5
MCF2-202ENST00000370573 RCCD1A6NED2 376 aa5.66□□□□□ -1.5
MCF2-202ENST00000370573 ADAMTS12P58397 1594 aa5.66□□□□□ -1.5
MCF2-202ENST00000370573 MAGI1Q96QZ7 1491 aaPredicted RBP5.65□□□□□ -1.5
MCF2-202ENST00000370573 METTL3Q86U44 580 aaKnown RBP5.64□□□□□ -1.51
MCF2-202ENST00000370573 PXYLP1Q8TE99 480 aa5.64□□□□□ -1.51
MCF2-202ENST00000370573 SYNJ2O15056 1496 aa5.64□□□□□ -1.51
MCF2-202ENST00000370573 DNAJB2P25686 324 aa5.64□□□□□ -1.51
MCF2-202ENST00000370573 CHMP7Q8WUX9 453 aaPredicted RBP5.64□□□□□ -1.51
MCF2-202ENST00000370573 PHOX2BQ99453 314 aa5.64□□□□□ -1.51
MCF2-202ENST00000370573 OATP04181 439 aa5.63□□□□□ -1.51
MCF2-202ENST00000370573 RANGAP1P46060 587 aaPredicted RBP5.63□□□□□ -1.51
MCF2-202ENST00000370573 TMEM134Q9H6X4 195 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms