RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 ZFYVE9O95405 1425 aa21.84■■□□□ 1.09
COL9A1-204ENST00000370496 TXNDC2Q86VQ3 553 aa21.82■■□□□ 1.08
COL9A1-204ENST00000370496 PPP1R15AO75807 674 aaPredicted RBP21.8■■□□□ 1.08
COL9A1-204ENST00000370496 ZNF326Q5BKZ1 582 aaKnown RBP21.8■■□□□ 1.08
COL9A1-204ENST00000370496 NEXMIFQ5QGS0 1516 aa21.79■■□□□ 1.08
COL9A1-204ENST00000370496 LTKP29376 864 aa21.79■■□□□ 1.08
COL9A1-204ENST00000370496 PPLO60437 1756 aa21.77■■□□□ 1.08
COL9A1-204ENST00000370496 HDGFP51858 240 aaKnown RBP21.76■■□□□ 1.07
COL9A1-204ENST00000370496 ANKRD30BQ9BXX2 1392 aa21.76■■□□□ 1.07
COL9A1-204ENST00000370496 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.75■■□□□ 1.07
COL9A1-204ENST00000370496 PCGF6Q9BYE7 350 aa21.74■■□□□ 1.07
COL9A1-204ENST00000370496 IFT172Q9UG01 1749 aa21.74■■□□□ 1.07
COL9A1-204ENST00000370496 PLEKHG1Q9ULL1 1385 aa21.74■■□□□ 1.07
COL9A1-204ENST00000370496 SPATA31E1Q6ZUB1 1445 aa21.73■■□□□ 1.07
COL9A1-204ENST00000370496 NUTM2DQ5VT03 806 aaPredicted RBP21.73■■□□□ 1.07
COL9A1-204ENST00000370496 BCANQ96GW7 911 aa21.73■■□□□ 1.07
COL9A1-204ENST00000370496 DIP2AQ14689 1571 aa21.72■■□□□ 1.07
COL9A1-204ENST00000370496 DHX57Q6P158 1386 aaKnown RBP21.7■■□□□ 1.06
COL9A1-204ENST00000370496 SETBP1Q9Y6X0 1596 aa21.69■■□□□ 1.06
COL9A1-204ENST00000370496 ZNF335Q9H4Z2 1342 aaPredicted RBP21.68■■□□□ 1.06
COL9A1-204ENST00000370496 NRXN3Q9Y4C0 1643 aa21.68■■□□□ 1.06
COL9A1-204ENST00000370496 LTBP4Q8N2S1 1624 aa21.67■■□□□ 1.06
COL9A1-204ENST00000370496 RPGRIP1LQ68CZ1 1315 aa21.67■■□□□ 1.06
COL9A1-204ENST00000370496 RGL3Q3MIN7 710 aa21.67■■□□□ 1.06
COL9A1-204ENST00000370496 SLC26A8Q96RN1 970 aa21.64■■□□□ 1.06
COL9A1-204ENST00000370496 STRCP1A6NGW2 1772 aa21.64■■□□□ 1.05
COL9A1-204ENST00000370496 CPS1P31327 1500 aa21.64■■□□□ 1.05
COL9A1-204ENST00000370496 ADAMTS13Q76LX8 1427 aa21.63■■□□□ 1.05
COL9A1-204ENST00000370496 NWD1Q149M9 1564 aa21.62■■□□□ 1.05
COL9A1-204ENST00000370496 VGFO15240 615 aaPredicted RBP21.61■■□□□ 1.05
COL9A1-204ENST00000370496 MYOM2P54296 1465 aa21.61■■□□□ 1.05
COL9A1-204ENST00000370496 SETD1AO15047 1707 aaKnown RBP21.6■■□□□ 1.05
COL9A1-204ENST00000370496 CHD2O14647 1828 aaKnown RBP21.59■■□□□ 1.05
COL9A1-204ENST00000370496 LAMC1P11047 1609 aa21.57■■□□□ 1.04
COL9A1-204ENST00000370496 ALKQ9UM73 1620 aa21.56■■□□□ 1.04
COL9A1-204ENST00000370496 NKTRP30414 1462 aaKnown RBP21.56■■□□□ 1.04
COL9A1-204ENST00000370496 TBX22Q9Y458 520 aa21.56■■□□□ 1.04
COL9A1-204ENST00000370496 PIK3C2GO75747 1445 aa21.55■■□□□ 1.04
COL9A1-204ENST00000370496 CERKQ8TCT0 537 aa21.54■■□□□ 1.04
COL9A1-204ENST00000370496 ADGRF5Q8IZF2 1346 aa21.54■■□□□ 1.04
COL9A1-204ENST00000370496 PIK3R4Q99570 1358 aa21.54■■□□□ 1.04
COL9A1-204ENST00000370496 IQSEC2Q5JU85 1478 aa21.54■■□□□ 1.04
COL9A1-204ENST00000370496 XRN1Q8IZH2 1706 aaKnown RBP21.53■■□□□ 1.04
COL9A1-204ENST00000370496 NRXN1Q9ULB1 1477 aa21.53■■□□□ 1.04
COL9A1-204ENST00000370496 LRRC7Q96NW7 1537 aa21.51■■□□□ 1.03
COL9A1-204ENST00000370496 KCNA6P17658 529 aa21.5■■□□□ 1.03
COL9A1-204ENST00000370496 SIN3AQ96ST3 1273 aa21.5■■□□□ 1.03
COL9A1-204ENST00000370496 METP08581 1390 aa21.5■■□□□ 1.03
COL9A1-204ENST00000370496 NEUROD1Q13562 356 aa21.49■■□□□ 1.03
COL9A1-204ENST00000370496 DCAF11Q8TEB1 546 aa21.49■■□□□ 1.03
COL9A1-204ENST00000370496 XIRP1Q702N8 1843 aaKnown RBP21.49■■□□□ 1.03
COL9A1-204ENST00000370496 KDM2AQ9Y2K7 1162 aa21.48■■□□□ 1.03
COL9A1-204ENST00000370496 PTPRUQ92729 1446 aa21.47■■□□□ 1.03
COL9A1-204ENST00000370496 ASXL1Q8IXJ9 1541 aa21.47■■□□□ 1.03
COL9A1-204ENST00000370496 KNDC1Q76NI1 1749 aa21.44■■□□□ 1.02
COL9A1-204ENST00000370496 STAC3Q96MF2 364 aa21.44■■□□□ 1.02
COL9A1-204ENST00000370496 TMEM94Q12767 1356 aa21.44■■□□□ 1.02
COL9A1-204ENST00000370496 AMOTL2Q9Y2J4 779 aa21.43■■□□□ 1.02
COL9A1-204ENST00000370496 TONSLQ96HA7 1378 aa21.43■■□□□ 1.02
COL9A1-204ENST00000370496 PROSER2Q86WR7 435 aaPredicted RBP21.42■■□□□ 1.02
COL9A1-204ENST00000370496 PTCH1Q13635 1447 aa21.41■■□□□ 1.02
COL9A1-204ENST00000370496 KIAA1210Q9ULL0 1709 aa21.41■■□□□ 1.02
COL9A1-204ENST00000370496 PRAG1Q86YV5 1406 aa21.4■■□□□ 1.02
COL9A1-204ENST00000370496 CFAP70Q5T0N1 1121 aa21.38■■□□□ 1.01
COL9A1-204ENST00000370496 CCER1Q8TC90 406 aaPredicted RBP21.38■■□□□ 1.01
COL9A1-204ENST00000370496 L3MBTL2Q969R5 705 aa21.38■■□□□ 1.01
COL9A1-204ENST00000370496 C14orf93Q9H972 538 aaKnown RBP21.38■■□□□ 1.01
COL9A1-204ENST00000370496 RBM33Q96EV2 1170 aaKnown RBP21.37■■□□□ 1.01
COL9A1-204ENST00000370496 YTHDC2Q9H6S0 1430 aaKnown RBP21.37■■□□□ 1.01
COL9A1-204ENST00000370496 ADGRB1O14514 1584 aa21.37■■□□□ 1.01
COL9A1-204ENST00000370496 CLSPNQ9HAW4 1339 aa21.37■■□□□ 1.01
COL9A1-204ENST00000370496 NALCNQ8IZF0 1738 aa21.37■■□□□ 1.01
COL9A1-204ENST00000370496 C14orf37Q86TY3 774 aa21.36■■□□□ 1.01
COL9A1-204ENST00000370496 LRPPRCP42704 1394 aaKnown RBP21.36■■□□□ 1.01
COL9A1-204ENST00000370496 MSH6P52701 1360 aa21.36■■□□□ 1.01
COL9A1-204ENST00000370496 TMEM132EQ6IEE7 984 aa21.36■■□□□ 1.01
COL9A1-204ENST00000370496 TECPR2O15040 1411 aa21.35■■□□□ 1.01
COL9A1-204ENST00000370496 ROBO2Q9HCK4 1378 aa21.34■■□□□ 1.01
COL9A1-204ENST00000370496 TRPM1Q7Z4N2 1603 aa21.34■■□□□ 1.01
COL9A1-204ENST00000370496 NCOA3Q9Y6Q9 1424 aa21.34■■□□□ 1.01
COL9A1-204ENST00000370496 UBAP1LF5GYI3 381 aa21.34■■□□□ 1.01
COL9A1-204ENST00000370496 FBXO41Q8TF61 875 aa21.34■■□□□ 1.01
COL9A1-204ENST00000370496 STK26Q9P289 416 aa21.34■■□□□ 1.01
COL9A1-204ENST00000370496 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.33■■□□□ 1
COL9A1-204ENST00000370496 ADGRL3Q9HAR2 1447 aa21.31■■□□□ 1
COL9A1-204ENST00000370496 ABCC11Q96J66 1382 aa21.3■■□□□ 1
COL9A1-204ENST00000370496 DLC1Q96QB1 1528 aa21.3■■□□□ 1
COL9A1-204ENST00000370496 ARHGEF28Q8N1W1 1705 aaKnown RBP21.29■■□□□ 1
COL9A1-204ENST00000370496 TOM1O60784 492 aa21.29■■□□□ 1
COL9A1-204ENST00000370496 DCCP43146 1447 aa21.27■■□□□ 1
COL9A1-204ENST00000370496 SCAF1Q9H7N4 1312 aaKnown RBP21.27■■□□□ 1
COL9A1-204ENST00000370496 FAM135BQ49AJ0 1406 aa21.26■□□□□ 0.99
COL9A1-204ENST00000370496 CDC42BPGQ6DT37 1551 aa21.25■□□□□ 0.99
COL9A1-204ENST00000370496 PIP4K2BP78356 416 aa21.24■□□□□ 0.99
COL9A1-204ENST00000370496 ATF3P18847 181 aa21.23■□□□□ 0.99
COL9A1-204ENST00000370496 C19orf44Q9H6X5 657 aa21.23■□□□□ 0.99
COL9A1-204ENST00000370496 ROCK2O75116 1388 aaKnown RBP21.23■□□□□ 0.99
COL9A1-204ENST00000370496 PLEKHH1Q9ULM0 1364 aa21.23■□□□□ 0.99
COL9A1-204ENST00000370496 TRAK1Q9UPV9 953 aa21.23■□□□□ 0.99
COL9A1-204ENST00000370496 RALGAPBQ86X10 1494 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms