RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 PLEKHG1Q9ULL1 1385 aa28.46■■■□□ 2.15
CKS1B-203ENST00000368439 SLC26A8Q96RN1 970 aa28.43■■■□□ 2.14
CKS1B-203ENST00000368439 XIRP1Q702N8 1843 aaKnown RBP28.42■■■□□ 2.14
CKS1B-203ENST00000368439 SLC4A1APQ9BWU0 796 aaKnown RBP28.42■■■□□ 2.14
CKS1B-203ENST00000368439 UBAP1LF5GYI3 381 aa28.41■■■□□ 2.14
CKS1B-203ENST00000368439 HDGFP51858 240 aaKnown RBP28.41■■■□□ 2.14
CKS1B-203ENST00000368439 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.4■■■□□ 2.14
CKS1B-203ENST00000368439 ALKQ9UM73 1620 aa28.4■■■□□ 2.14
CKS1B-203ENST00000368439 KIF1BO60333 1816 aa28.39■■■□□ 2.14
CKS1B-203ENST00000368439 SETD5Q9C0A6 1442 aa28.38■■■□□ 2.13
CKS1B-203ENST00000368439 NWD1Q149M9 1564 aa28.37■■■□□ 2.13
CKS1B-203ENST00000368439 PPP1R15AO75807 674 aaPredicted RBP28.37■■■□□ 2.13
CKS1B-203ENST00000368439 NUTM2DQ5VT03 806 aaPredicted RBP28.37■■■□□ 2.13
CKS1B-203ENST00000368439 KCNA6P17658 529 aa28.36■■■□□ 2.13
CKS1B-203ENST00000368439 CHD2O14647 1828 aaKnown RBP28.36■■■□□ 2.13
CKS1B-203ENST00000368439 ADAMTS13Q76LX8 1427 aa28.35■■■□□ 2.13
CKS1B-203ENST00000368439 SENP3Q9H4L4 574 aaPredicted RBP28.34■■■□□ 2.13
CKS1B-203ENST00000368439 BCANQ96GW7 911 aa28.33■■■□□ 2.13
CKS1B-203ENST00000368439 NEXMIFQ5QGS0 1516 aa28.33■■■□□ 2.13
CKS1B-203ENST00000368439 MPHOSPH9Q99550 1183 aa28.32■■■□□ 2.12
CKS1B-203ENST00000368439 TBX22Q9Y458 520 aa28.32■■■□□ 2.12
CKS1B-203ENST00000368439 NRXN3Q9Y4C0 1643 aa28.32■■■□□ 2.12
CKS1B-203ENST00000368439 FOXD1Q16676 465 aa28.31■■■□□ 2.12
CKS1B-203ENST00000368439 DIP2AQ14689 1571 aa28.31■■■□□ 2.12
CKS1B-203ENST00000368439 TOM1O60784 492 aa28.3■■■□□ 2.12
CKS1B-203ENST00000368439 NKTRP30414 1462 aaKnown RBP28.28■■■□□ 2.12
CKS1B-203ENST00000368439 RAB3GAP2Q9H2M9 1393 aa28.28■■■□□ 2.12
CKS1B-203ENST00000368439 ACIN1Q9UKV3 1341 aaKnown RBP28.27■■■□□ 2.12
CKS1B-203ENST00000368439 ZNF326Q5BKZ1 582 aaKnown RBP28.27■■■□□ 2.12
CKS1B-203ENST00000368439 SETBP1Q9Y6X0 1596 aa28.27■■■□□ 2.12
CKS1B-203ENST00000368439 TMEM94Q12767 1356 aa28.25■■■□□ 2.11
CKS1B-203ENST00000368439 PIK3R4Q99570 1358 aa28.23■■■□□ 2.11
CKS1B-203ENST00000368439 PIP4K2BP78356 416 aa28.21■■■□□ 2.11
CKS1B-203ENST00000368439 PROSER2Q86WR7 435 aaPredicted RBP28.21■■■□□ 2.11
CKS1B-203ENST00000368439 PPLO60437 1756 aa28.2■■■□□ 2.11
CKS1B-203ENST00000368439 PTPRUQ92729 1446 aa28.18■■■□□ 2.1
CKS1B-203ENST00000368439 RBM33Q96EV2 1170 aaKnown RBP28.18■■■□□ 2.1
CKS1B-203ENST00000368439 CCDC144AA2RUR9 1427 aa28.18■■■□□ 2.1
CKS1B-203ENST00000368439 SPATA31E1Q6ZUB1 1445 aa28.16■■■□□ 2.1
CKS1B-203ENST00000368439 RPGRIP1LQ68CZ1 1315 aa28.16■■■□□ 2.1
CKS1B-203ENST00000368439 SCAF1Q9H7N4 1312 aaKnown RBP28.16■■■□□ 2.1
CKS1B-203ENST00000368439 XRN1Q8IZH2 1706 aaKnown RBP28.15■■■□□ 2.1
CKS1B-203ENST00000368439 SETD1AO15047 1707 aaKnown RBP28.14■■■□□ 2.1
CKS1B-203ENST00000368439 HRCP23327 699 aa28.13■■■□□ 2.09
CKS1B-203ENST00000368439 METP08581 1390 aa28.12■■■□□ 2.09
CKS1B-203ENST00000368439 IFT172Q9UG01 1749 aa28.12■■■□□ 2.09
CKS1B-203ENST00000368439 HSPA1LP34931 641 aa28.12■■■□□ 2.09
CKS1B-203ENST00000368439 NCOA3Q9Y6Q9 1424 aa28.1■■■□□ 2.09
CKS1B-203ENST00000368439 VGFO15240 615 aaPredicted RBP28.1■■■□□ 2.09
CKS1B-203ENST00000368439 AMOTL2Q9Y2J4 779 aa28.1■■■□□ 2.09
CKS1B-203ENST00000368439 MSH6P52701 1360 aa28.06■■■□□ 2.08
CKS1B-203ENST00000368439 FAM135BQ49AJ0 1406 aa28.04■■■□□ 2.08
CKS1B-203ENST00000368439 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.03■■■□□ 2.08
CKS1B-203ENST00000368439 RGL3Q3MIN7 710 aa28.02■■■□□ 2.08
CKS1B-203ENST00000368439 ANKRD30BQ9BXX2 1392 aa28.01■■■□□ 2.07
CKS1B-203ENST00000368439 ADGRF5Q8IZF2 1346 aa28.01■■■□□ 2.07
CKS1B-203ENST00000368439 ROBO1Q9Y6N7 1651 aa28■■■□□ 2.07
CKS1B-203ENST00000368439 PRAG1Q86YV5 1406 aa27.96■■■□□ 2.07
CKS1B-203ENST00000368439 C19orf44Q9H6X5 657 aa27.96■■■□□ 2.07
CKS1B-203ENST00000368439 SLAIN2Q9P270 581 aa27.95■■■□□ 2.06
CKS1B-203ENST00000368439 C14orf37Q86TY3 774 aa27.93■■■□□ 2.06
CKS1B-203ENST00000368439 PIK3C2GO75747 1445 aa27.92■■■□□ 2.06
CKS1B-203ENST00000368439 PTCH1Q13635 1447 aa27.92■■■□□ 2.06
CKS1B-203ENST00000368439 NALCNQ8IZF0 1738 aa27.92■■■□□ 2.06
CKS1B-203ENST00000368439 NRXN1Q9ULB1 1477 aa27.91■■■□□ 2.06
CKS1B-203ENST00000368439 DCCP43146 1447 aa27.9■■■□□ 2.06
CKS1B-203ENST00000368439 MYOM2P54296 1465 aa27.89■■■□□ 2.06
CKS1B-203ENST00000368439 ROBO2Q9HCK4 1378 aa27.89■■■□□ 2.06
CKS1B-203ENST00000368439 ASXL1Q8IXJ9 1541 aa27.89■■■□□ 2.06
CKS1B-203ENST00000368439 CADPS2Q86UW7 1296 aa27.89■■■□□ 2.06
CKS1B-203ENST00000368439 DISP3Q9P2K9 1392 aa27.88■■■□□ 2.05
CKS1B-203ENST00000368439 ADGRL3Q9HAR2 1447 aa27.88■■■□□ 2.05
CKS1B-203ENST00000368439 ATF3P18847 181 aa27.86■■■□□ 2.05
CKS1B-203ENST00000368439 MED1Q15648 1581 aaPredicted RBP27.86■■■□□ 2.05
CKS1B-203ENST00000368439 KNDC1Q76NI1 1749 aa27.83■■■□□ 2.05
CKS1B-203ENST00000368439 MST1RQ04912 1400 aa27.83■■■□□ 2.05
CKS1B-203ENST00000368439 PHLPP1O60346 1717 aa27.82■■■□□ 2.04
CKS1B-203ENST00000368439 TECPR2O15040 1411 aa27.82■■■□□ 2.04
CKS1B-203ENST00000368439 C14orf93Q9H972 538 aaKnown RBP27.81■■■□□ 2.04
CKS1B-203ENST00000368439 LAMC1P11047 1609 aa27.81■■■□□ 2.04
CKS1B-203ENST00000368439 LRPPRCP42704 1394 aaKnown RBP27.8■■■□□ 2.04
CKS1B-203ENST00000368439 TMEM132EQ6IEE7 984 aa27.79■■■□□ 2.04
CKS1B-203ENST00000368439 COL16A1Q07092 1604 aaPredicted RBP27.78■■■□□ 2.04
CKS1B-203ENST00000368439 AHDC1Q5TGY3 1603 aaPredicted RBP27.78■■■□□ 2.04
CKS1B-203ENST00000368439 ABCC11Q96J66 1382 aa27.77■■■□□ 2.04
CKS1B-203ENST00000368439 DHX57Q6P158 1386 aaKnown RBP27.76■■■□□ 2.03
CKS1B-203ENST00000368439 YTHDC2Q9H6S0 1430 aaKnown RBP27.75■■■□□ 2.03
CKS1B-203ENST00000368439 CFAP70Q5T0N1 1121 aa27.75■■■□□ 2.03
CKS1B-203ENST00000368439 BRINP3Q76B58 766 aa27.75■■■□□ 2.03
CKS1B-203ENST00000368439 STK26Q9P289 416 aa27.73■■■□□ 2.03
CKS1B-203ENST00000368439 ILDR2Q71H61 639 aa27.71■■■□□ 2.03
CKS1B-203ENST00000368439 DCAF11Q8TEB1 546 aa27.71■■■□□ 2.03
CKS1B-203ENST00000368439 NHSL1Q5SYE7 1610 aa27.7■■■□□ 2.03
CKS1B-203ENST00000368439 ADGRB1O14514 1584 aa27.7■■■□□ 2.03
CKS1B-203ENST00000368439 WAPLQ7Z5K2 1190 aa27.7■■■□□ 2.02
CKS1B-203ENST00000368439 PLEKHH1Q9ULM0 1364 aa27.7■■■□□ 2.02
CKS1B-203ENST00000368439 C1orf167Q5SNV9 1468 aa27.7■■■□□ 2.02
CKS1B-203ENST00000368439 CDC42BPGQ6DT37 1551 aa27.69■■■□□ 2.02
CKS1B-203ENST00000368439 STAC3Q96MF2 364 aa27.68■■■□□ 2.02
CKS1B-203ENST00000368439 KDM2AQ9Y2K7 1162 aa27.68■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms