RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 IFT140Q96RY7 1462 aa11.17□□□□□ -0.62
SYNE1-205ENST00000367251 ROCK1Q13464 1354 aa11.17□□□□□ -0.62
SYNE1-205ENST00000367251 SYNJ2O15056 1496 aa11.17□□□□□ -0.62
SYNE1-205ENST00000367251 CHMP3Q9Y3E7 222 aa11.17□□□□□ -0.62
SYNE1-205ENST00000367251 RUNDC1Q96C34 613 aa11.17□□□□□ -0.62
SYNE1-205ENST00000367251 CHMP4CQ96CF2 233 aa11.17□□□□□ -0.62
SYNE1-205ENST00000367251 TOPBP1Q92547 1522 aa11.16□□□□□ -0.62
SYNE1-205ENST00000367251 CEP89Q96ST8 783 aa11.16□□□□□ -0.62
SYNE1-205ENST00000367251 CTDP1Q9Y5B0 961 aaPredicted RBP11.16□□□□□ -0.62
SYNE1-205ENST00000367251 DRC7Q8IY82 874 aa11.16□□□□□ -0.62
SYNE1-205ENST00000367251 MARCH6O60337 910 aa11.16□□□□□ -0.62
SYNE1-205ENST00000367251 MRC2Q9UBG0 1479 aa11.16□□□□□ -0.62
SYNE1-205ENST00000367251 CLUAP1Q96AJ1 413 aa11.15□□□□□ -0.62
SYNE1-205ENST00000367251 CUL7Q14999 1698 aa11.15□□□□□ -0.62
SYNE1-205ENST00000367251 GSE1Q14687 1217 aa11.15□□□□□ -0.62
SYNE1-205ENST00000367251 RASSF8Q8NHQ8 419 aa11.15□□□□□ -0.62
SYNE1-205ENST00000367251 COG3Q96JB2 828 aa11.15□□□□□ -0.63
SYNE1-205ENST00000367251 TPM4P67936 248 aa11.14□□□□□ -0.63
SYNE1-205ENST00000367251 API5Q9BZZ5 524 aaKnown RBP11.14□□□□□ -0.63
SYNE1-205ENST00000367251 APBB1O00213 710 aa11.14□□□□□ -0.63
SYNE1-205ENST00000367251 APAF1O14727 1248 aa11.13□□□□□ -0.63
SYNE1-205ENST00000367251 TROQ12816 1431 aaPredicted RBP11.13□□□□□ -0.63
SYNE1-205ENST00000367251 KIF16BQ96L93 1317 aa11.13□□□□□ -0.63
SYNE1-205ENST00000367251 NINLQ9Y2I6 1382 aa11.13□□□□□ -0.63
SYNE1-205ENST00000367251 KIF3AQ9Y496 699 aa11.13□□□□□ -0.63
SYNE1-205ENST00000367251 DIAPH1O60610 1272 aaKnown RBP11.13□□□□□ -0.63
SYNE1-205ENST00000367251 DZIP1LQ8IYY4 767 aaKnown RBP11.13□□□□□ -0.63
SYNE1-205ENST00000367251 POLA1P09884 1462 aaPredicted RBP11.13□□□□□ -0.63
SYNE1-205ENST00000367251 ARHGAP5Q13017 1502 aa11.12□□□□□ -0.63
SYNE1-205ENST00000367251 PEG3Q9GZU2 1588 aa11.12□□□□□ -0.63
SYNE1-205ENST00000367251 TRIM6-TRIM34B2RNG4 842 aa11.12□□□□□ -0.63
SYNE1-205ENST00000367251 AMPHP49418 695 aa11.12□□□□□ -0.63
SYNE1-205ENST00000367251 ABCA10Q8WWZ4 1543 aa11.12□□□□□ -0.63
SYNE1-205ENST00000367251 ZNF644Q9H582 1327 aaPredicted RBP11.12□□□□□ -0.63
SYNE1-205ENST00000367251 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.12□□□□□ -0.63
SYNE1-205ENST00000367251 CCDC34Q96HJ3 373 aa11.12□□□□□ -0.63
SYNE1-205ENST00000367251 GZF1Q9H116 711 aaPredicted RBP11.12□□□□□ -0.63
SYNE1-205ENST00000367251 TCEAL9Q9UHQ7 104 aa11.12□□□□□ -0.63
SYNE1-205ENST00000367251 ATP6V1DQ9Y5K8 247 aa11.12□□□□□ -0.63
SYNE1-205ENST00000367251 DAPK1P53355 1430 aa11.12□□□□□ -0.63
SYNE1-205ENST00000367251 PLIN1O60240 522 aa11.11□□□□□ -0.63
SYNE1-205ENST00000367251 NGDNQ8NEJ9 315 aaKnown RBP11.11□□□□□ -0.63
SYNE1-205ENST00000367251 SMG6Q86US8 1419 aaKnown RBP11.11□□□□□ -0.63
SYNE1-205ENST00000367251 A0A0U1RQG5 324 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-205ENST00000367251 C9orf84Q5VXU9 1444 aa11.11□□□□□ -0.63
SYNE1-205ENST00000367251 RSPH6AQ9H0K4 717 aa11.1□□□□□ -0.63
SYNE1-205ENST00000367251 TOMM22Q9NS69 142 aa11.1□□□□□ -0.63
SYNE1-205ENST00000367251 RRP7AQ9Y3A4 280 aaKnown RBP11.1□□□□□ -0.63
SYNE1-205ENST00000367251 REC8O95072 547 aa11.1□□□□□ -0.63
SYNE1-205ENST00000367251 COG6Q9Y2V7 657 aa11.1□□□□□ -0.63
SYNE1-205ENST00000367251 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.1□□□□□ -0.63
SYNE1-205ENST00000367251 TRIM34Q9BYJ4 488 aa11.1□□□□□ -0.63
SYNE1-205ENST00000367251 RAD21O60216 631 aa11.1□□□□□ -0.63
SYNE1-205ENST00000367251 ANKRD45Q5TZF3 282 aa11.09□□□□□ -0.63
SYNE1-205ENST00000367251 CHMP5Q9NZZ3 219 aa11.09□□□□□ -0.63
SYNE1-205ENST00000367251 GNAI1P63096 354 aa11.09□□□□□ -0.63
SYNE1-205ENST00000367251 CC2D2AQ9P2K1 1620 aa11.09□□□□□ -0.63
SYNE1-205ENST00000367251 SLC4A10Q6U841 1118 aa11.09□□□□□ -0.63
SYNE1-205ENST00000367251 EVA1CP58658 441 aa11.08□□□□□ -0.64
SYNE1-205ENST00000367251 BIVM-ERCC5R4GMW8 1640 aa11.07□□□□□ -0.64
SYNE1-205ENST00000367251 PCF11O94913 1555 aaKnown RBP11.07□□□□□ -0.64
SYNE1-205ENST00000367251 WDR97A6NE52 1622 aa11.07□□□□□ -0.64
SYNE1-205ENST00000367251 RIPK4P57078 832 aa11.06□□□□□ -0.64
SYNE1-205ENST00000367251 RUFY2Q8WXA3 655 aa11.06□□□□□ -0.64
SYNE1-205ENST00000367251 NAIPQ13075 1403 aa11.06□□□□□ -0.64
SYNE1-205ENST00000367251 CT47B1P0C2W7 299 aaPredicted RBP11.06□□□□□ -0.64
SYNE1-205ENST00000367251 PDE3AQ14432 1141 aa11.06□□□□□ -0.64
SYNE1-205ENST00000367251 NUTM2DQ5VT03 806 aaPredicted RBP11.06□□□□□ -0.64
SYNE1-205ENST00000367251 EPRSP07814 1512 aaKnown RBP11.06□□□□□ -0.64
SYNE1-205ENST00000367251 KIAA0586Q9BVV6 1533 aa11.06□□□□□ -0.64
SYNE1-205ENST00000367251 CREBRFQ8IUR6 639 aa11.05□□□□□ -0.64
SYNE1-205ENST00000367251 HSP90B1P14625 803 aaKnown RBP11.05□□□□□ -0.64
SYNE1-205ENST00000367251 PPP2R1AP30153 589 aa11.05□□□□□ -0.64
SYNE1-205ENST00000367251 LAMC3Q9Y6N6 1575 aa11.05□□□□□ -0.64
SYNE1-205ENST00000367251 LRRFIP1Q32MZ4 808 aaKnown RBP11.04□□□□□ -0.64
SYNE1-205ENST00000367251 IQGAP2Q13576 1575 aa11.04□□□□□ -0.64
SYNE1-205ENST00000367251 NUCB2P80303 420 aa11.04□□□□□ -0.64
SYNE1-205ENST00000367251 DDX49Q9Y6V7 483 aaKnown RBP11.04□□□□□ -0.64
SYNE1-205ENST00000367251 PTPN23Q9H3S7 1636 aa11.04□□□□□ -0.64
SYNE1-205ENST00000367251 INTS3Q68E01 1043 aaKnown RBP11.04□□□□□ -0.64
SYNE1-205ENST00000367251 PRG4Q92954 1404 aaPredicted RBP11.04□□□□□ -0.64
SYNE1-205ENST00000367251 FBXW7Q969H0 707 aa11.04□□□□□ -0.64
SYNE1-205ENST00000367251 PPP1R1BQ9UD71 204 aaPredicted RBP11.04□□□□□ -0.64
SYNE1-205ENST00000367251 MINK1Q8N4C8 1332 aaPredicted RBP11.03□□□□□ -0.64
SYNE1-205ENST00000367251 BCL2L13Q9BXK5 485 aa11.03□□□□□ -0.64
SYNE1-205ENST00000367251 ERBINQ96RT1 1412 aa11.03□□□□□ -0.64
SYNE1-205ENST00000367251 HSP90AB4PQ58FF6 505 aa11.03□□□□□ -0.64
SYNE1-205ENST00000367251 ADAMTS8Q9UP79 889 aa11.03□□□□□ -0.64
SYNE1-205ENST00000367251 PNISRQ8TF01 805 aaKnown RBP11.03□□□□□ -0.64
SYNE1-205ENST00000367251 SF3B2Q13435 895 aaKnown RBP11.02□□□□□ -0.64
SYNE1-205ENST00000367251 C1orf141Q5JVX7 400 aa11.02□□□□□ -0.65
SYNE1-205ENST00000367251 OSCARQ8IYS5 282 aa11.02□□□□□ -0.65
SYNE1-205ENST00000367251 RPGRIP1LQ68CZ1 1315 aa11.01□□□□□ -0.65
SYNE1-205ENST00000367251 NBPF8Q3BBV2 869 aa11.01□□□□□ -0.65
SYNE1-205ENST00000367251 CCDC141Q6ZP82 1450 aa11.01□□□□□ -0.65
SYNE1-205ENST00000367251 BICRAQ9NZM4 1560 aa11.01□□□□□ -0.65
SYNE1-205ENST00000367251 SAMD1Q6SPF0 538 aaPredicted RBP11.01□□□□□ -0.65
SYNE1-205ENST00000367251 NOL10Q9BSC4 688 aaKnown RBP11.01□□□□□ -0.65
SYNE1-205ENST00000367251 C22orf23Q9BZE7 217 aa11.01□□□□□ -0.65
SYNE1-205ENST00000367251 PAF1Q8N7H5 531 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms