RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 ABCC1P33527 1531 aa4.13□□□□□ -1.75
CSMD3-202ENST00000339701 TOPBP1Q92547 1522 aa4.13□□□□□ -1.75
CSMD3-202ENST00000339701 KDM5DQ9BY66 1539 aa4.13□□□□□ -1.75
CSMD3-202ENST00000339701 ZNF608Q9ULD9 1512 aaPredicted RBP4.13□□□□□ -1.75
CSMD3-202ENST00000339701 KDM5CP41229 1560 aa4.13□□□□□ -1.75
CSMD3-202ENST00000339701 DNMT1P26358 1616 aaKnown RBP4.12□□□□□ -1.75
CSMD3-202ENST00000339701 POLD1P28340 1107 aa4.12□□□□□ -1.75
CSMD3-202ENST00000339701 NINLQ9Y2I6 1382 aa4.12□□□□□ -1.75
CSMD3-202ENST00000339701 ZNF330Q9Y3S2 320 aaPredicted RBP4.12□□□□□ -1.75
CSMD3-202ENST00000339701 RAD54L2Q9Y4B4 1467 aa4.12□□□□□ -1.75
CSMD3-202ENST00000339701 PREX2Q70Z35 1606 aa4.12□□□□□ -1.75
CSMD3-202ENST00000339701 HMMRO75330 724 aa4.12□□□□□ -1.75
CSMD3-202ENST00000339701 UHRF1BP1LA0JNW5 1464 aa4.12□□□□□ -1.75
CSMD3-202ENST00000339701 RPRD2Q5VT52 1461 aaKnown RBP4.12□□□□□ -1.75
CSMD3-202ENST00000339701 KIAA2012Q0VF49 1180 aa4.12□□□□□ -1.75
CSMD3-202ENST00000339701 CLSTN1O94985 981 aa4.12□□□□□ -1.75
CSMD3-202ENST00000339701 CCNB3Q8WWL7 1395 aa4.11□□□□□ -1.75
CSMD3-202ENST00000339701 FRAT2O75474 233 aaPredicted RBP4.11□□□□□ -1.75
CSMD3-202ENST00000339701 RTF1Q92541 710 aaKnown RBP4.11□□□□□ -1.75
CSMD3-202ENST00000339701 MYOM3Q5VTT5 1437 aa4.11□□□□□ -1.75
CSMD3-202ENST00000339701 SETQ01105 290 aaPredicted RBP4.11□□□□□ -1.75
CSMD3-202ENST00000339701 SYCP2Q9BX26 1530 aa4.11□□□□□ -1.75
CSMD3-202ENST00000339701 PRXQ9BXM0 1461 aa4.11□□□□□ -1.75
CSMD3-202ENST00000339701 CDR1P51861 262 aa4.11□□□□□ -1.75
CSMD3-202ENST00000339701 CAVIN1Q6NZI2 390 aaKnown RBP4.11□□□□□ -1.75
CSMD3-202ENST00000339701 SYNMO15061 1565 aa4.11□□□□□ -1.75
CSMD3-202ENST00000339701 KIAA0556O60303 1618 aa4.11□□□□□ -1.75
CSMD3-202ENST00000339701 MAGI2Q86UL8 1455 aa4.11□□□□□ -1.75
CSMD3-202ENST00000339701 ATP6V1DQ9Y5K8 247 aa4.11□□□□□ -1.75
CSMD3-202ENST00000339701 CEP152O94986 1710 aa4.11□□□□□ -1.75
CSMD3-202ENST00000339701 PTPRGP23470 1445 aa4.11□□□□□ -1.75
CSMD3-202ENST00000339701 KDM6BO15054 1643 aa4.11□□□□□ -1.75
CSMD3-202ENST00000339701 TARBP1Q13395 1621 aaKnown RBP4.11□□□□□ -1.75
CSMD3-202ENST00000339701 HSP90B1P14625 803 aaKnown RBP4.11□□□□□ -1.75
CSMD3-202ENST00000339701 CCDC7Q96M83 1385 aa4.11□□□□□ -1.75
CSMD3-202ENST00000339701 MCCP23508 829 aa4.11□□□□□ -1.75
CSMD3-202ENST00000339701 PROSER2Q86WR7 435 aaPredicted RBP4.11□□□□□ -1.75
CSMD3-202ENST00000339701 HFM1A2PYH4 1435 aa4.11□□□□□ -1.75
CSMD3-202ENST00000339701 RUSC2Q8N2Y8 1516 aa4.1□□□□□ -1.75
CSMD3-202ENST00000339701 PLA2R1Q13018 1463 aa4.1□□□□□ -1.75
CSMD3-202ENST00000339701 TMEM87AQ8NBN3 555 aa4.1□□□□□ -1.75
CSMD3-202ENST00000339701 NOL10Q9BSC4 688 aaKnown RBP4.1□□□□□ -1.75
CSMD3-202ENST00000339701 NUP160Q12769 1436 aa4.1□□□□□ -1.75
CSMD3-202ENST00000339701 MROH2AA6NES4 1674 aa4.1□□□□□ -1.75
CSMD3-202ENST00000339701 RTEL1-TNFRSF6BF6WH68 1400 aa4.1□□□□□ -1.75
CSMD3-202ENST00000339701 NUDCQ9Y266 331 aa4.1□□□□□ -1.75
CSMD3-202ENST00000339701 CHIC2Q9UKJ5 165 aa4.1□□□□□ -1.75
CSMD3-202ENST00000339701 FHOD3Q2V2M9 1422 aa4.1□□□□□ -1.75
CSMD3-202ENST00000339701 TPM4P67936 248 aa4.1□□□□□ -1.75
CSMD3-202ENST00000339701 CHD1O14646 1710 aa4.1□□□□□ -1.75
CSMD3-202ENST00000339701 TAF7LQ5H9L4 462 aa4.1□□□□□ -1.75
CSMD3-202ENST00000339701 LRRFIP1Q32MZ4 808 aaKnown RBP4.1□□□□□ -1.75
CSMD3-202ENST00000339701 HDGFL2Q7Z4V5 671 aaPredicted RBP4.09□□□□□ -1.75
CSMD3-202ENST00000339701 AMOTL1Q8IY63 956 aa4.09□□□□□ -1.75
CSMD3-202ENST00000339701 TCEAL9Q9UHQ7 104 aa4.09□□□□□ -1.75
CSMD3-202ENST00000339701 SPAG9O60271 1321 aaKnown RBP4.09□□□□□ -1.75
CSMD3-202ENST00000339701 ARHGEF40Q8TER5 1519 aa4.09□□□□□ -1.75
CSMD3-202ENST00000339701 CNTLNQ9NXG0 1405 aa4.09□□□□□ -1.75
CSMD3-202ENST00000339701 WDR43Q15061 677 aaKnown RBP eCLIP4.09□□□□□ -1.75
CSMD3-202ENST00000339701 TAF3Q5VWG9 929 aa4.09□□□□□ -1.75
CSMD3-202ENST00000339701 CCDC70Q6NSX1 233 aa4.09□□□□□ -1.75
CSMD3-202ENST00000339701 MAPKBP1O60336 1514 aa4.09□□□□□ -1.75
CSMD3-202ENST00000339701 SOX12O15370 315 aa4.09□□□□□ -1.76
CSMD3-202ENST00000339701 CCDC136Q96JN2 1154 aa4.09□□□□□ -1.76
CSMD3-202ENST00000339701 KDM2AQ9Y2K7 1162 aa4.09□□□□□ -1.76
CSMD3-202ENST00000339701 KIF16BQ96L93 1317 aa4.09□□□□□ -1.76
CSMD3-202ENST00000339701 TET3O43151 1660 aa4.08□□□□□ -1.76
CSMD3-202ENST00000339701 RDXP35241 583 aaKnown RBP4.08□□□□□ -1.76
CSMD3-202ENST00000339701 PRM3Q9NNZ6 103 aa4.08□□□□□ -1.76
CSMD3-202ENST00000339701 UHRF1BP1Q6BDS2 1440 aa4.08□□□□□ -1.76
CSMD3-202ENST00000339701 LMTK3Q96Q04 1460 aa4.08□□□□□ -1.76
CSMD3-202ENST00000339701 SPDYE4A6NLX3 237 aa4.08□□□□□ -1.76
CSMD3-202ENST00000339701 RBM33Q96EV2 1170 aaKnown RBP4.08□□□□□ -1.76
CSMD3-202ENST00000339701 IQGAP3Q86VI3 1631 aa4.08□□□□□ -1.76
CSMD3-202ENST00000339701 RIMS1Q86UR5 1692 aaKnown RBP4.08□□□□□ -1.76
CSMD3-202ENST00000339701 MSNP26038 577 aaKnown RBP4.08□□□□□ -1.76
CSMD3-202ENST00000339701 DNAJC5Q9H3Z4 198 aa4.08□□□□□ -1.76
CSMD3-202ENST00000339701 ERBINQ96RT1 1412 aa4.08□□□□□ -1.76
CSMD3-202ENST00000339701 CDK13Q14004 1512 aaKnown RBP4.08□□□□□ -1.76
CSMD3-202ENST00000339701 WWC2Q6AWC2 1192 aa4.08□□□□□ -1.76
CSMD3-202ENST00000339701 DUOX2Q9NRD8 1548 aa4.08□□□□□ -1.76
CSMD3-202ENST00000339701 CAMSAP1Q5T5Y3 1602 aa4.08□□□□□ -1.76
CSMD3-202ENST00000339701 NOM1Q5C9Z4 860 aaKnown RBP4.08□□□□□ -1.76
CSMD3-202ENST00000339701 GBP4Q96PP9 640 aa4.08□□□□□ -1.76
CSMD3-202ENST00000339701 PLB1Q6P1J6 1458 aa4.08□□□□□ -1.76
CSMD3-202ENST00000339701 CDC42BPBQ9Y5S2 1711 aa4.07□□□□□ -1.76
CSMD3-202ENST00000339701 GPRASP1Q5JY77 1395 aa4.07□□□□□ -1.76
CSMD3-202ENST00000339701 REREQ9P2R6 1566 aa4.07□□□□□ -1.76
CSMD3-202ENST00000339701 TPM3P06753 285 aa4.07□□□□□ -1.76
CSMD3-202ENST00000339701 ARHGEF6Q15052 776 aa4.07□□□□□ -1.76
CSMD3-202ENST00000339701 SKOR2Q2VWA4 1001 aaPredicted RBP4.07□□□□□ -1.76
CSMD3-202ENST00000339701 POLA1P09884 1462 aaPredicted RBP4.07□□□□□ -1.76
CSMD3-202ENST00000339701 C11orf95C9JLR9 678 aaPredicted RBP4.07□□□□□ -1.76
CSMD3-202ENST00000339701 KCNJ4P48050 445 aa4.07□□□□□ -1.76
CSMD3-202ENST00000339701 TXLNBQ8N3L3 684 aa4.07□□□□□ -1.76
CSMD3-202ENST00000339701 LRPPRCP42704 1394 aaKnown RBP4.07□□□□□ -1.76
CSMD3-202ENST00000339701 PCF11O94913 1555 aaKnown RBP4.07□□□□□ -1.76
CSMD3-202ENST00000339701 KIF3BO15066 747 aa4.07□□□□□ -1.76
CSMD3-202ENST00000339701 AMPHP49418 695 aa4.07□□□□□ -1.76
CSMD3-202ENST00000339701 ACBD3Q9H3P7 528 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms