RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 ZFYVE9O95405 1425 aa23.39■■□□□ 1.33
CCDC28A-201ENST00000332797 ZNF326Q5BKZ1 582 aaKnown RBP23.38■■□□□ 1.33
CCDC28A-201ENST00000332797 PPP1R15AO75807 674 aaPredicted RBP23.35■■□□□ 1.33
CCDC28A-201ENST00000332797 ANKRD30BQ9BXX2 1392 aa23.34■■□□□ 1.33
CCDC28A-201ENST00000332797 HDGFP51858 240 aaKnown RBP23.34■■□□□ 1.33
CCDC28A-201ENST00000332797 PCGF6Q9BYE7 350 aa23.34■■□□□ 1.33
CCDC28A-201ENST00000332797 NUTM2DQ5VT03 806 aaPredicted RBP23.33■■□□□ 1.33
CCDC28A-201ENST00000332797 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.33■■□□□ 1.33
CCDC28A-201ENST00000332797 SENP3Q9H4L4 574 aaPredicted RBP23.3■■□□□ 1.32
CCDC28A-201ENST00000332797 NEXMIFQ5QGS0 1516 aa23.3■■□□□ 1.32
CCDC28A-201ENST00000332797 SPATA31E1Q6ZUB1 1445 aa23.29■■□□□ 1.32
CCDC28A-201ENST00000332797 BCANQ96GW7 911 aa23.29■■□□□ 1.32
CCDC28A-201ENST00000332797 PLEKHG1Q9ULL1 1385 aa23.28■■□□□ 1.32
CCDC28A-201ENST00000332797 RGL3Q3MIN7 710 aa23.27■■□□□ 1.32
CCDC28A-201ENST00000332797 ZNF335Q9H4Z2 1342 aaPredicted RBP23.27■■□□□ 1.31
CCDC28A-201ENST00000332797 DHX57Q6P158 1386 aaKnown RBP23.24■■□□□ 1.31
CCDC28A-201ENST00000332797 PPLO60437 1756 aa23.24■■□□□ 1.31
CCDC28A-201ENST00000332797 RPGRIP1LQ68CZ1 1315 aa23.24■■□□□ 1.31
CCDC28A-201ENST00000332797 SLC26A8Q96RN1 970 aa23.24■■□□□ 1.31
CCDC28A-201ENST00000332797 LTBP4Q8N2S1 1624 aa23.22■■□□□ 1.31
CCDC28A-201ENST00000332797 IFT172Q9UG01 1749 aa23.2■■□□□ 1.3
CCDC28A-201ENST00000332797 VGFO15240 615 aaPredicted RBP23.18■■□□□ 1.3
CCDC28A-201ENST00000332797 SETBP1Q9Y6X0 1596 aa23.18■■□□□ 1.3
CCDC28A-201ENST00000332797 NRXN3Q9Y4C0 1643 aa23.18■■□□□ 1.3
CCDC28A-201ENST00000332797 ADAMTS13Q76LX8 1427 aa23.18■■□□□ 1.3
CCDC28A-201ENST00000332797 DIP2AQ14689 1571 aa23.18■■□□□ 1.3
CCDC28A-201ENST00000332797 STRCP1A6NGW2 1772 aa23.15■■□□□ 1.3
CCDC28A-201ENST00000332797 CPS1P31327 1500 aa23.14■■□□□ 1.3
CCDC28A-201ENST00000332797 TBX22Q9Y458 520 aa23.14■■□□□ 1.29
CCDC28A-201ENST00000332797 CERKQ8TCT0 537 aa23.13■■□□□ 1.29
CCDC28A-201ENST00000332797 ADGRF5Q8IZF2 1346 aa23.12■■□□□ 1.29
CCDC28A-201ENST00000332797 MYOM2P54296 1465 aa23.1■■□□□ 1.29
CCDC28A-201ENST00000332797 NWD1Q149M9 1564 aa23.1■■□□□ 1.29
CCDC28A-201ENST00000332797 SIN3AQ96ST3 1273 aa23.1■■□□□ 1.29
CCDC28A-201ENST00000332797 KCNA6P17658 529 aa23.09■■□□□ 1.29
CCDC28A-201ENST00000332797 CHD2O14647 1828 aaKnown RBP23.08■■□□□ 1.29
CCDC28A-201ENST00000332797 ALKQ9UM73 1620 aa23.08■■□□□ 1.29
CCDC28A-201ENST00000332797 NEUROD1Q13562 356 aa23.07■■□□□ 1.28
CCDC28A-201ENST00000332797 DCAF11Q8TEB1 546 aa23.07■■□□□ 1.28
CCDC28A-201ENST00000332797 PIK3R4Q99570 1358 aa23.07■■□□□ 1.28
CCDC28A-201ENST00000332797 SETD1AO15047 1707 aaKnown RBP23.06■■□□□ 1.28
CCDC28A-201ENST00000332797 PIK3C2GO75747 1445 aa23.06■■□□□ 1.28
CCDC28A-201ENST00000332797 METP08581 1390 aa23.06■■□□□ 1.28
CCDC28A-201ENST00000332797 LRRC7Q96NW7 1537 aa23.05■■□□□ 1.28
CCDC28A-201ENST00000332797 KDM2AQ9Y2K7 1162 aa23.05■■□□□ 1.28
CCDC28A-201ENST00000332797 NRXN1Q9ULB1 1477 aa23.05■■□□□ 1.28
CCDC28A-201ENST00000332797 NKTRP30414 1462 aaKnown RBP23.04■■□□□ 1.28
CCDC28A-201ENST00000332797 PTPRUQ92729 1446 aa23.04■■□□□ 1.28
CCDC28A-201ENST00000332797 IQSEC2Q5JU85 1478 aa23.03■■□□□ 1.28
CCDC28A-201ENST00000332797 XRN1Q8IZH2 1706 aaKnown RBP23.01■■□□□ 1.27
CCDC28A-201ENST00000332797 PROSER2Q86WR7 435 aaPredicted RBP23■■□□□ 1.27
CCDC28A-201ENST00000332797 AMOTL2Q9Y2J4 779 aa23■■□□□ 1.27
CCDC28A-201ENST00000332797 LAMC1P11047 1609 aa22.99■■□□□ 1.27
CCDC28A-201ENST00000332797 STAC3Q96MF2 364 aa22.98■■□□□ 1.27
CCDC28A-201ENST00000332797 XIRP1Q702N8 1843 aaKnown RBP22.97■■□□□ 1.27
CCDC28A-201ENST00000332797 TMEM94Q12767 1356 aa22.97■■□□□ 1.27
CCDC28A-201ENST00000332797 ASXL1Q8IXJ9 1541 aa22.97■■□□□ 1.27
CCDC28A-201ENST00000332797 RBM33Q96EV2 1170 aaKnown RBP22.97■■□□□ 1.27
CCDC28A-201ENST00000332797 CFAP70Q5T0N1 1121 aa22.96■■□□□ 1.27
CCDC28A-201ENST00000332797 L3MBTL2Q969R5 705 aa22.96■■□□□ 1.27
CCDC28A-201ENST00000332797 C14orf93Q9H972 538 aaKnown RBP22.96■■□□□ 1.27
CCDC28A-201ENST00000332797 TMEM132EQ6IEE7 984 aa22.93■■□□□ 1.26
CCDC28A-201ENST00000332797 TONSLQ96HA7 1378 aa22.92■■□□□ 1.26
CCDC28A-201ENST00000332797 CCER1Q8TC90 406 aaPredicted RBP22.91■■□□□ 1.26
CCDC28A-201ENST00000332797 FBXO41Q8TF61 875 aa22.91■■□□□ 1.26
CCDC28A-201ENST00000332797 PTCH1Q13635 1447 aa22.9■■□□□ 1.26
CCDC28A-201ENST00000332797 PRAG1Q86YV5 1406 aa22.9■■□□□ 1.26
CCDC28A-201ENST00000332797 STK26Q9P289 416 aa22.9■■□□□ 1.26
CCDC28A-201ENST00000332797 UBAP1LF5GYI3 381 aa22.89■■□□□ 1.25
CCDC28A-201ENST00000332797 C14orf37Q86TY3 774 aa22.89■■□□□ 1.25
CCDC28A-201ENST00000332797 YTHDC2Q9H6S0 1430 aaKnown RBP22.89■■□□□ 1.25
CCDC28A-201ENST00000332797 LRPPRCP42704 1394 aaKnown RBP22.88■■□□□ 1.25
CCDC28A-201ENST00000332797 CLSPNQ9HAW4 1339 aa22.88■■□□□ 1.25
CCDC28A-201ENST00000332797 ROBO2Q9HCK4 1378 aa22.88■■□□□ 1.25
CCDC28A-201ENST00000332797 ADGRB1O14514 1584 aa22.88■■□□□ 1.25
CCDC28A-201ENST00000332797 NCOA3Q9Y6Q9 1424 aa22.87■■□□□ 1.25
CCDC28A-201ENST00000332797 KNDC1Q76NI1 1749 aa22.87■■□□□ 1.25
CCDC28A-201ENST00000332797 MSH6P52701 1360 aa22.86■■□□□ 1.25
CCDC28A-201ENST00000332797 TECPR2O15040 1411 aa22.85■■□□□ 1.25
CCDC28A-201ENST00000332797 KIAA1210Q9ULL0 1709 aa22.85■■□□□ 1.25
CCDC28A-201ENST00000332797 ABCC11Q96J66 1382 aa22.84■■□□□ 1.25
CCDC28A-201ENST00000332797 TOM1O60784 492 aa22.84■■□□□ 1.25
CCDC28A-201ENST00000332797 NALCNQ8IZF0 1738 aa22.82■■□□□ 1.24
CCDC28A-201ENST00000332797 ILDR1Q86SU0 546 aaPredicted RBP22.81■■□□□ 1.24
CCDC28A-201ENST00000332797 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.81■■□□□ 1.24
CCDC28A-201ENST00000332797 ADGRL3Q9HAR2 1447 aa22.8■■□□□ 1.24
CCDC28A-201ENST00000332797 SCAF1Q9H7N4 1312 aaKnown RBP22.8■■□□□ 1.24
CCDC28A-201ENST00000332797 C19orf44Q9H6X5 657 aa22.79■■□□□ 1.24
CCDC28A-201ENST00000332797 TRPM1Q7Z4N2 1603 aa22.79■■□□□ 1.24
CCDC28A-201ENST00000332797 PIP4K2BP78356 416 aa22.79■■□□□ 1.24
CCDC28A-201ENST00000332797 WAPLQ7Z5K2 1190 aa22.79■■□□□ 1.24
CCDC28A-201ENST00000332797 NBPF1Q3BBV0 1214 aa22.78■■□□□ 1.24
CCDC28A-201ENST00000332797 TRAK1Q9UPV9 953 aa22.78■■□□□ 1.24
CCDC28A-201ENST00000332797 DLC1Q96QB1 1528 aa22.77■■□□□ 1.24
CCDC28A-201ENST00000332797 PLEKHH1Q9ULM0 1364 aa22.77■■□□□ 1.24
CCDC28A-201ENST00000332797 FAM135BQ49AJ0 1406 aa22.77■■□□□ 1.24
CCDC28A-201ENST00000332797 ATF3P18847 181 aa22.76■■□□□ 1.23
CCDC28A-201ENST00000332797 NBPF8Q3BBV2 869 aa22.76■■□□□ 1.23
CCDC28A-201ENST00000332797 DCCP43146 1447 aa22.75■■□□□ 1.23
CCDC28A-201ENST00000332797 SIRT1Q96EB6 747 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms