RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 PPP1R15AO75807 674 aaPredicted RBP20.71■□□□□ 0.91
LIMS1-201ENST00000332345 BCANQ96GW7 911 aa20.71■□□□□ 0.91
LIMS1-201ENST00000332345 TRPM2O94759 1503 aa20.71■□□□□ 0.91
LIMS1-201ENST00000332345 ZNF326Q5BKZ1 582 aaKnown RBP20.7■□□□□ 0.9
LIMS1-201ENST00000332345 RIMS2Q9UQ26 1411 aa20.7■□□□□ 0.9
LIMS1-201ENST00000332345 ZFYVE9O95405 1425 aa20.67■□□□□ 0.9
LIMS1-201ENST00000332345 KIF1BO60333 1816 aa20.67■□□□□ 0.9
LIMS1-201ENST00000332345 CLTCL1P53675 1640 aa20.66■□□□□ 0.9
LIMS1-201ENST00000332345 LTBP4Q8N2S1 1624 aa20.66■□□□□ 0.9
LIMS1-201ENST00000332345 TRIM26Q12899 539 aaPredicted RBP20.64■□□□□ 0.89
LIMS1-201ENST00000332345 NUTM2DQ5VT03 806 aaPredicted RBP20.64■□□□□ 0.89
LIMS1-201ENST00000332345 FBXO41Q8TF61 875 aa20.64■□□□□ 0.89
LIMS1-201ENST00000332345 SLC26A8Q96RN1 970 aa20.64■□□□□ 0.89
LIMS1-201ENST00000332345 CCDC144AA2RUR9 1427 aa20.63■□□□□ 0.89
LIMS1-201ENST00000332345 PLEKHG1Q9ULL1 1385 aa20.63■□□□□ 0.89
LIMS1-201ENST00000332345 RPGRIP1LQ68CZ1 1315 aa20.6■□□□□ 0.89
LIMS1-201ENST00000332345 TBX22Q9Y458 520 aa20.6■□□□□ 0.89
LIMS1-201ENST00000332345 CPS1P31327 1500 aa20.59■□□□□ 0.89
LIMS1-201ENST00000332345 IQSEC2Q5JU85 1478 aa20.58■□□□□ 0.89
LIMS1-201ENST00000332345 VGFO15240 615 aaPredicted RBP20.58■□□□□ 0.89
LIMS1-201ENST00000332345 ILDR1Q86SU0 546 aaPredicted RBP20.58■□□□□ 0.89
LIMS1-201ENST00000332345 KCNA6P17658 529 aa20.57■□□□□ 0.88
LIMS1-201ENST00000332345 RGL3Q3MIN7 710 aa20.56■□□□□ 0.88
LIMS1-201ENST00000332345 ANKRD30BQ9BXX2 1392 aa20.53■□□□□ 0.88
LIMS1-201ENST00000332345 NEXMIFQ5QGS0 1516 aa20.53■□□□□ 0.88
LIMS1-201ENST00000332345 STRCP1A6NGW2 1772 aa20.51■□□□□ 0.87
LIMS1-201ENST00000332345 SPATA31E1Q6ZUB1 1445 aa20.5■□□□□ 0.87
LIMS1-201ENST00000332345 ADAMTS13Q76LX8 1427 aa20.5■□□□□ 0.87
LIMS1-201ENST00000332345 PIK3R4Q99570 1358 aa20.49■□□□□ 0.87
LIMS1-201ENST00000332345 PROSER2Q86WR7 435 aaPredicted RBP20.49■□□□□ 0.87
LIMS1-201ENST00000332345 DIP2AQ14689 1571 aa20.49■□□□□ 0.87
LIMS1-201ENST00000332345 UBAP1LF5GYI3 381 aa20.48■□□□□ 0.87
LIMS1-201ENST00000332345 LRRC7Q96NW7 1537 aa20.48■□□□□ 0.87
LIMS1-201ENST00000332345 TOM1O60784 492 aa20.47■□□□□ 0.87
LIMS1-201ENST00000332345 CHD2O14647 1828 aaKnown RBP20.47■□□□□ 0.87
LIMS1-201ENST00000332345 SETBP1Q9Y6X0 1596 aa20.46■□□□□ 0.87
LIMS1-201ENST00000332345 PPLO60437 1756 aa20.46■□□□□ 0.87
LIMS1-201ENST00000332345 AMOTL2Q9Y2J4 779 aa20.44■□□□□ 0.86
LIMS1-201ENST00000332345 NRXN3Q9Y4C0 1643 aa20.42■□□□□ 0.86
LIMS1-201ENST00000332345 NKTRP30414 1462 aaKnown RBP20.42■□□□□ 0.86
LIMS1-201ENST00000332345 NWD1Q149M9 1564 aa20.42■□□□□ 0.86
LIMS1-201ENST00000332345 ADGRF5Q8IZF2 1346 aa20.41■□□□□ 0.86
LIMS1-201ENST00000332345 TMEM94Q12767 1356 aa20.41■□□□□ 0.86
LIMS1-201ENST00000332345 METP08581 1390 aa20.4■□□□□ 0.86
LIMS1-201ENST00000332345 STAC3Q96MF2 364 aa20.4■□□□□ 0.86
LIMS1-201ENST00000332345 RBM33Q96EV2 1170 aaKnown RBP20.38■□□□□ 0.85
LIMS1-201ENST00000332345 IFT172Q9UG01 1749 aa20.38■□□□□ 0.85
LIMS1-201ENST00000332345 ALKQ9UM73 1620 aa20.37■□□□□ 0.85
LIMS1-201ENST00000332345 XIRP1Q702N8 1843 aaKnown RBP20.37■□□□□ 0.85
LIMS1-201ENST00000332345 PTPRUQ92729 1446 aa20.36■□□□□ 0.85
LIMS1-201ENST00000332345 PIP4K2BP78356 416 aa20.36■□□□□ 0.85
LIMS1-201ENST00000332345 DCAF11Q8TEB1 546 aa20.36■□□□□ 0.85
LIMS1-201ENST00000332345 NCOA3Q9Y6Q9 1424 aa20.36■□□□□ 0.85
LIMS1-201ENST00000332345 SCAF1Q9H7N4 1312 aaKnown RBP20.35■□□□□ 0.85
LIMS1-201ENST00000332345 C14orf37Q86TY3 774 aa20.35■□□□□ 0.85
LIMS1-201ENST00000332345 KDM2AQ9Y2K7 1162 aa20.35■□□□□ 0.85
LIMS1-201ENST00000332345 MSH6P52701 1360 aa20.34■□□□□ 0.85
LIMS1-201ENST00000332345 C19orf44Q9H6X5 657 aa20.32■□□□□ 0.84
LIMS1-201ENST00000332345 C14orf93Q9H972 538 aaKnown RBP20.32■□□□□ 0.84
LIMS1-201ENST00000332345 MYOM2P54296 1465 aa20.31■□□□□ 0.84
LIMS1-201ENST00000332345 PIK3C2GO75747 1445 aa20.31■□□□□ 0.84
LIMS1-201ENST00000332345 DHX57Q6P158 1386 aaKnown RBP20.31■□□□□ 0.84
LIMS1-201ENST00000332345 SETD1AO15047 1707 aaKnown RBP20.3■□□□□ 0.84
LIMS1-201ENST00000332345 PCGF6Q9BYE7 350 aa20.29■□□□□ 0.84
LIMS1-201ENST00000332345 XRN1Q8IZH2 1706 aaKnown RBP20.29■□□□□ 0.84
LIMS1-201ENST00000332345 NRXN1Q9ULB1 1477 aa20.29■□□□□ 0.84
LIMS1-201ENST00000332345 ATF3P18847 181 aa20.28■□□□□ 0.84
LIMS1-201ENST00000332345 CFAP70Q5T0N1 1121 aa20.28■□□□□ 0.84
LIMS1-201ENST00000332345 TMEM132EQ6IEE7 984 aa20.28■□□□□ 0.84
LIMS1-201ENST00000332345 NEUROD1Q13562 356 aa20.27■□□□□ 0.84
LIMS1-201ENST00000332345 CADPS2Q86UW7 1296 aa20.27■□□□□ 0.84
LIMS1-201ENST00000332345 SIN3AQ96ST3 1273 aa20.27■□□□□ 0.84
LIMS1-201ENST00000332345 STK26Q9P289 416 aa20.27■□□□□ 0.84
LIMS1-201ENST00000332345 SLAIN2Q9P270 581 aa20.26■□□□□ 0.83
LIMS1-201ENST00000332345 LRPPRCP42704 1394 aaKnown RBP20.24■□□□□ 0.83
LIMS1-201ENST00000332345 PTCH1Q13635 1447 aa20.24■□□□□ 0.83
LIMS1-201ENST00000332345 ABCC11Q96J66 1382 aa20.23■□□□□ 0.83
LIMS1-201ENST00000332345 ROBO2Q9HCK4 1378 aa20.23■□□□□ 0.83
LIMS1-201ENST00000332345 LAMC1P11047 1609 aa20.23■□□□□ 0.83
LIMS1-201ENST00000332345 PRAG1Q86YV5 1406 aa20.22■□□□□ 0.83
LIMS1-201ENST00000332345 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.22■□□□□ 0.83
LIMS1-201ENST00000332345 FAM135BQ49AJ0 1406 aa20.21■□□□□ 0.83
LIMS1-201ENST00000332345 YTHDC2Q9H6S0 1430 aaKnown RBP20.21■□□□□ 0.83
LIMS1-201ENST00000332345 L3MBTL2Q969R5 705 aa20.21■□□□□ 0.83
LIMS1-201ENST00000332345 SIRT1Q96EB6 747 aa20.21■□□□□ 0.83
LIMS1-201ENST00000332345 HSPA1LP34931 641 aa20.19■□□□□ 0.82
LIMS1-201ENST00000332345 TECPR2O15040 1411 aa20.19■□□□□ 0.82
LIMS1-201ENST00000332345 DCCP43146 1447 aa20.19■□□□□ 0.82
LIMS1-201ENST00000332345 WAPLQ7Z5K2 1190 aa20.18■□□□□ 0.82
LIMS1-201ENST00000332345 ADGRL3Q9HAR2 1447 aa20.18■□□□□ 0.82
LIMS1-201ENST00000332345 ASXL1Q8IXJ9 1541 aa20.17■□□□□ 0.82
LIMS1-201ENST00000332345 KNDC1Q76NI1 1749 aa20.14■□□□□ 0.81
LIMS1-201ENST00000332345 TRAK1Q9UPV9 953 aa20.14■□□□□ 0.81
LIMS1-201ENST00000332345 POGKQ9P215 609 aa20.13■□□□□ 0.81
LIMS1-201ENST00000332345 NALCNQ8IZF0 1738 aa20.12■□□□□ 0.81
LIMS1-201ENST00000332345 ROBO1Q9Y6N7 1651 aa20.12■□□□□ 0.81
LIMS1-201ENST00000332345 PRAM1Q96QH2 718 aa20.11■□□□□ 0.81
LIMS1-201ENST00000332345 ADGRB1O14514 1584 aa20.11■□□□□ 0.81
LIMS1-201ENST00000332345 KIAA1210Q9ULL0 1709 aa20.1■□□□□ 0.81
LIMS1-201ENST00000332345 TONSLQ96HA7 1378 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms