RNA–Protein interactions for RNA: ENST00000329231.8

ATPAF1-201, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2 BASIC

Gene ATPAF1, Length 1,241 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-201ENST00000329231 BCANQ96GW7 911 aa41.3■■■■■ 4.2
ATPAF1-201ENST00000329231 UBAP1LF5GYI3 381 aa41.29■■■■■ 4.2
ATPAF1-201ENST00000329231 PLEKHG1Q9ULL1 1385 aa41.26■■■■■ 4.2
ATPAF1-201ENST00000329231 SLC26A8Q96RN1 970 aa41.26■■■■■ 4.2
ATPAF1-201ENST00000329231 TRPM2O94759 1503 aa41.25■■■■■ 4.19
ATPAF1-201ENST00000329231 STRCP1A6NGW2 1772 aa41.25■■■■■ 4.19
ATPAF1-201ENST00000329231 ACIN1Q9UKV3 1341 aaKnown RBP41.23■■■■■ 4.19
ATPAF1-201ENST00000329231 SETD5Q9C0A6 1442 aa41.2■■■■■ 4.19
ATPAF1-201ENST00000329231 LRRC7Q96NW7 1537 aa41.2■■■■■ 4.19
ATPAF1-201ENST00000329231 NUTM2DQ5VT03 806 aaPredicted RBP41.17■■■■■ 4.18
ATPAF1-201ENST00000329231 CLTCL1P53675 1640 aa41.17■■■■■ 4.18
ATPAF1-201ENST00000329231 KCNA6P17658 529 aa41.16■■■■■ 4.18
ATPAF1-201ENST00000329231 SENP3Q9H4L4 574 aaPredicted RBP41.16■■■■■ 4.18
ATPAF1-201ENST00000329231 TOM1O60784 492 aa41.15■■■■■ 4.18
ATPAF1-201ENST00000329231 ZNF326Q5BKZ1 582 aaKnown RBP41.15■■■■■ 4.18
ATPAF1-201ENST00000329231 MPHOSPH9Q99550 1183 aa41.12■■■■■ 4.17
ATPAF1-201ENST00000329231 TBX22Q9Y458 520 aa41.11■■■■■ 4.17
ATPAF1-201ENST00000329231 FOXD1Q16676 465 aa41.07■■■■■ 4.17
ATPAF1-201ENST00000329231 KIF1BO60333 1816 aa41.04■■■■■ 4.16
ATPAF1-201ENST00000329231 ADAMTS13Q76LX8 1427 aa41.03■■■■■ 4.16
ATPAF1-201ENST00000329231 RAB3GAP2Q9H2M9 1393 aa41.03■■■■■ 4.16
ATPAF1-201ENST00000329231 DIP2AQ14689 1571 aa41.01■■■■■ 4.16
ATPAF1-201ENST00000329231 NWD1Q149M9 1564 aa41.01■■■■■ 4.16
ATPAF1-201ENST00000329231 PROSER2Q86WR7 435 aaPredicted RBP41.01■■■■■ 4.16
ATPAF1-201ENST00000329231 NKTRP30414 1462 aaKnown RBP41.01■■■■■ 4.16
ATPAF1-201ENST00000329231 SCAF1Q9H7N4 1312 aaKnown RBP41■■■■■ 4.15
ATPAF1-201ENST00000329231 PIP4K2BP78356 416 aa41■■■■■ 4.15
ATPAF1-201ENST00000329231 TMEM94Q12767 1356 aa40.98■■■■■ 4.15
ATPAF1-201ENST00000329231 NEXMIFQ5QGS0 1516 aa40.96■■■■■ 4.15
ATPAF1-201ENST00000329231 PIK3R4Q99570 1358 aa40.96■■■■■ 4.15
ATPAF1-201ENST00000329231 CCDC144AA2RUR9 1427 aa40.94■■■■■ 4.14
ATPAF1-201ENST00000329231 CHD2O14647 1828 aaKnown RBP40.93■■■■■ 4.14
ATPAF1-201ENST00000329231 RPGRIP1LQ68CZ1 1315 aa40.93■■■■■ 4.14
ATPAF1-201ENST00000329231 SETBP1Q9Y6X0 1596 aa40.91■■■■■ 4.14
ATPAF1-201ENST00000329231 XIRP1Q702N8 1843 aaKnown RBP40.91■■■■■ 4.14
ATPAF1-201ENST00000329231 ALKQ9UM73 1620 aa40.91■■■■■ 4.14
ATPAF1-201ENST00000329231 VGFO15240 615 aaPredicted RBP40.89■■■■■ 4.14
ATPAF1-201ENST00000329231 HRCP23327 699 aa40.87■■■■■ 4.13
ATPAF1-201ENST00000329231 RBM33Q96EV2 1170 aaKnown RBP40.86■■■■■ 4.13
ATPAF1-201ENST00000329231 NRXN3Q9Y4C0 1643 aa40.85■■■■■ 4.13
ATPAF1-201ENST00000329231 AMOTL2Q9Y2J4 779 aa40.81■■■■■ 4.12
ATPAF1-201ENST00000329231 MSH6P52701 1360 aa40.78■■■■■ 4.12
ATPAF1-201ENST00000329231 HSPA1LP34931 641 aa40.78■■■■■ 4.12
ATPAF1-201ENST00000329231 PTPRUQ92729 1446 aa40.77■■■■■ 4.12
ATPAF1-201ENST00000329231 NCOA3Q9Y6Q9 1424 aa40.77■■■■■ 4.12
ATPAF1-201ENST00000329231 SPATA31E1Q6ZUB1 1445 aa40.76■■■■■ 4.12
ATPAF1-201ENST00000329231 RGL3Q3MIN7 710 aa40.75■■■■■ 4.11
ATPAF1-201ENST00000329231 METP08581 1390 aa40.74■■■■■ 4.11
ATPAF1-201ENST00000329231 PPLO60437 1756 aa40.72■■■■■ 4.11
ATPAF1-201ENST00000329231 C14orf37Q86TY3 774 aa40.7■■■■■ 4.11
ATPAF1-201ENST00000329231 ANKRD30BQ9BXX2 1392 aa40.67■■■■■ 4.1
ATPAF1-201ENST00000329231 XRN1Q8IZH2 1706 aaKnown RBP40.66■■■■■ 4.1
ATPAF1-201ENST00000329231 FAM135BQ49AJ0 1406 aa40.65■■■■■ 4.1
ATPAF1-201ENST00000329231 C19orf44Q9H6X5 657 aa40.62■■■■■ 4.09
ATPAF1-201ENST00000329231 ADGRF5Q8IZF2 1346 aa40.61■■■■■ 4.09
ATPAF1-201ENST00000329231 SLAIN2Q9P270 581 aa40.59■■■■■ 4.09
ATPAF1-201ENST00000329231 CADPS2Q86UW7 1296 aa40.56■■■■■ 4.08
ATPAF1-201ENST00000329231 SETD1AO15047 1707 aaKnown RBP40.56■■■■■ 4.08
ATPAF1-201ENST00000329231 ATF3P18847 181 aa40.55■■■■■ 4.08
ATPAF1-201ENST00000329231 IFT172Q9UG01 1749 aa40.54■■■■■ 4.08
ATPAF1-201ENST00000329231 SIPA1L2Q9P2F8 1722 aaPredicted RBP40.5■■■■■ 4.07
ATPAF1-201ENST00000329231 DISP3Q9P2K9 1392 aa40.5■■■■■ 4.07
ATPAF1-201ENST00000329231 ROBO1Q9Y6N7 1651 aa40.49■■■■■ 4.07
ATPAF1-201ENST00000329231 PTCH1Q13635 1447 aa40.48■■■■■ 4.07
ATPAF1-201ENST00000329231 PIK3C2GO75747 1445 aa40.47■■■■■ 4.07
ATPAF1-201ENST00000329231 DCCP43146 1447 aa40.47■■■■■ 4.07
ATPAF1-201ENST00000329231 PRAG1Q86YV5 1406 aa40.45■■■■■ 4.07
ATPAF1-201ENST00000329231 ROBO2Q9HCK4 1378 aa40.42■■■■■ 4.06
ATPAF1-201ENST00000329231 MYOM2P54296 1465 aa40.42■■■■■ 4.06
ATPAF1-201ENST00000329231 ADGRL3Q9HAR2 1447 aa40.42■■■■■ 4.06
ATPAF1-201ENST00000329231 NRXN1Q9ULB1 1477 aa40.39■■■■■ 4.06
ATPAF1-201ENST00000329231 C14orf93Q9H972 538 aaKnown RBP40.35■■■■■ 4.05
ATPAF1-201ENST00000329231 LRPPRCP42704 1394 aaKnown RBP40.34■■■■■ 4.05
ATPAF1-201ENST00000329231 TMEM132EQ6IEE7 984 aa40.33■■■■■ 4.05
ATPAF1-201ENST00000329231 STK26Q9P289 416 aa40.32■■■■■ 4.05
ATPAF1-201ENST00000329231 NALCNQ8IZF0 1738 aa40.3■■■■■ 4.04
ATPAF1-201ENST00000329231 STAC3Q96MF2 364 aa40.3■■■■■ 4.04
ATPAF1-201ENST00000329231 TECPR2O15040 1411 aa40.29■■■■■ 4.04
ATPAF1-201ENST00000329231 MST1RQ04912 1400 aa40.29■■■■■ 4.04
ATPAF1-201ENST00000329231 ABCC11Q96J66 1382 aa40.29■■■■■ 4.04
ATPAF1-201ENST00000329231 MED1Q15648 1581 aaPredicted RBP40.28■■■■■ 4.04
ATPAF1-201ENST00000329231 ASXL1Q8IXJ9 1541 aa40.28■■■■■ 4.04
ATPAF1-201ENST00000329231 CFAP70Q5T0N1 1121 aa40.28■■■■■ 4.04
ATPAF1-201ENST00000329231 DCAF11Q8TEB1 546 aa40.28■■■■■ 4.04
ATPAF1-201ENST00000329231 BRINP3Q76B58 766 aa40.26■■■■■ 4.04
ATPAF1-201ENST00000329231 KDM2AQ9Y2K7 1162 aa40.26■■■■■ 4.04
ATPAF1-201ENST00000329231 YTHDC2Q9H6S0 1430 aaKnown RBP40.25■■■■■ 4.03
ATPAF1-201ENST00000329231 LAMC1P11047 1609 aa40.25■■■■■ 4.03
ATPAF1-201ENST00000329231 PHLPP1O60346 1717 aa40.24■■■■■ 4.03
ATPAF1-201ENST00000329231 DHX57Q6P158 1386 aaKnown RBP40.23■■■■■ 4.03
ATPAF1-201ENST00000329231 KNDC1Q76NI1 1749 aa40.19■■■■■ 4.02
ATPAF1-201ENST00000329231 AHDC1Q5TGY3 1603 aaPredicted RBP40.18■■■■■ 4.02
ATPAF1-201ENST00000329231 WAPLQ7Z5K2 1190 aa40.18■■■■■ 4.02
ATPAF1-201ENST00000329231 SIRT1Q96EB6 747 aa40.17■■■■■ 4.02
ATPAF1-201ENST00000329231 TRIM26Q12899 539 aaPredicted RBP40.16■■■■■ 4.02
ATPAF1-201ENST00000329231 C1orf167Q5SNV9 1468 aa40.14■■■■■ 4.02
ATPAF1-201ENST00000329231 JCADQ9P266 1359 aa40.14■■■■■ 4.02
ATPAF1-201ENST00000329231 COL16A1Q07092 1604 aaPredicted RBP40.13■■■■■ 4.02
ATPAF1-201ENST00000329231 PLEKHH1Q9ULM0 1364 aa40.11■■■■■ 4.01
ATPAF1-201ENST00000329231 PHF23Q9BUL5 403 aaPredicted RBP40.11■■■■■ 4.01
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms