RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 RBM33Q96EV2 1170 aaKnown RBP17.9■□□□□ 0.46
SCFD1-201ENST00000311943 ZNF326Q5BKZ1 582 aaKnown RBP17.89■□□□□ 0.45
SCFD1-201ENST00000311943 EID1Q9Y6B2 187 aa17.89■□□□□ 0.45
SCFD1-201ENST00000311943 STRCP1A6NGW2 1772 aa17.88■□□□□ 0.45
SCFD1-201ENST00000311943 ILDR1Q86SU0 546 aaPredicted RBP17.88■□□□□ 0.45
SCFD1-201ENST00000311943 BCANQ96GW7 911 aa17.88■□□□□ 0.45
SCFD1-201ENST00000311943 RGL3Q3MIN7 710 aa17.88■□□□□ 0.45
SCFD1-201ENST00000311943 KDM5AP29375 1690 aaKnown RBP17.86■□□□□ 0.45
SCFD1-201ENST00000311943 PPP1R15AO75807 674 aaPredicted RBP17.85■□□□□ 0.45
SCFD1-201ENST00000311943 TRIM26Q12899 539 aaPredicted RBP17.82■□□□□ 0.44
SCFD1-201ENST00000311943 NEXMIFQ5QGS0 1516 aa17.8■□□□□ 0.44
SCFD1-201ENST00000311943 CCDC144AA2RUR9 1427 aa17.8■□□□□ 0.44
SCFD1-201ENST00000311943 ADAMTS13Q76LX8 1427 aa17.8■□□□□ 0.44
SCFD1-201ENST00000311943 KIF1BO60333 1816 aa17.8■□□□□ 0.44
SCFD1-201ENST00000311943 ANKRD30BQ9BXX2 1392 aa17.78■□□□□ 0.44
SCFD1-201ENST00000311943 PLEKHG1Q9ULL1 1385 aa17.78■□□□□ 0.44
SCFD1-201ENST00000311943 SPATA31E1Q6ZUB1 1445 aa17.77■□□□□ 0.44
SCFD1-201ENST00000311943 NRXN3Q9Y4C0 1643 aa17.77■□□□□ 0.44
SCFD1-201ENST00000311943 ADGRF5Q8IZF2 1346 aa17.76■□□□□ 0.43
SCFD1-201ENST00000311943 HRCP23327 699 aa17.76■□□□□ 0.43
SCFD1-201ENST00000311943 PCGF6Q9BYE7 350 aa17.74■□□□□ 0.43
SCFD1-201ENST00000311943 METP08581 1390 aa17.74■□□□□ 0.43
SCFD1-201ENST00000311943 LRRC7Q96NW7 1537 aa17.74■□□□□ 0.43
SCFD1-201ENST00000311943 PTPRUQ92729 1446 aa17.74■□□□□ 0.43
SCFD1-201ENST00000311943 KCNA6P17658 529 aa17.74■□□□□ 0.43
SCFD1-201ENST00000311943 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.74■□□□□ 0.43
SCFD1-201ENST00000311943 SIN3AQ96ST3 1273 aa17.73■□□□□ 0.43
SCFD1-201ENST00000311943 FBXO41Q8TF61 875 aa17.72■□□□□ 0.43
SCFD1-201ENST00000311943 HDGFP51858 240 aaKnown RBP17.71■□□□□ 0.43
SCFD1-201ENST00000311943 PPLO60437 1756 aa17.71■□□□□ 0.43
SCFD1-201ENST00000311943 TBX22Q9Y458 520 aa17.71■□□□□ 0.42
SCFD1-201ENST00000311943 XIRP1Q702N8 1843 aaKnown RBP17.71■□□□□ 0.42
SCFD1-201ENST00000311943 KDM2AQ9Y2K7 1162 aa17.69■□□□□ 0.42
SCFD1-201ENST00000311943 UBAP1LF5GYI3 381 aa17.69■□□□□ 0.42
SCFD1-201ENST00000311943 ALKQ9UM73 1620 aa17.69■□□□□ 0.42
SCFD1-201ENST00000311943 PIP4K2BP78356 416 aa17.68■□□□□ 0.42
SCFD1-201ENST00000311943 PROSER2Q86WR7 435 aaPredicted RBP17.68■□□□□ 0.42
SCFD1-201ENST00000311943 AMOTL2Q9Y2J4 779 aa17.68■□□□□ 0.42
SCFD1-201ENST00000311943 TMEM94Q12767 1356 aa17.68■□□□□ 0.42
SCFD1-201ENST00000311943 DHX57Q6P158 1386 aaKnown RBP17.68■□□□□ 0.42
SCFD1-201ENST00000311943 CPS1P31327 1500 aa17.68■□□□□ 0.42
SCFD1-201ENST00000311943 TMEM132EQ6IEE7 984 aa17.67■□□□□ 0.42
SCFD1-201ENST00000311943 SETBP1Q9Y6X0 1596 aa17.67■□□□□ 0.42
SCFD1-201ENST00000311943 CHD2O14647 1828 aaKnown RBP17.67■□□□□ 0.42
SCFD1-201ENST00000311943 VGFO15240 615 aaPredicted RBP17.66■□□□□ 0.42
SCFD1-201ENST00000311943 IFT172Q9UG01 1749 aa17.66■□□□□ 0.42
SCFD1-201ENST00000311943 SCAF1Q9H7N4 1312 aaKnown RBP17.65■□□□□ 0.42
SCFD1-201ENST00000311943 NEUROD1Q13562 356 aa17.65■□□□□ 0.42
SCFD1-201ENST00000311943 DCAF11Q8TEB1 546 aa17.65■□□□□ 0.42
SCFD1-201ENST00000311943 SETD1AO15047 1707 aaKnown RBP17.64■□□□□ 0.41
SCFD1-201ENST00000311943 RPGRIP1LQ68CZ1 1315 aa17.64■□□□□ 0.41
SCFD1-201ENST00000311943 CFAP70Q5T0N1 1121 aa17.64■□□□□ 0.41
SCFD1-201ENST00000311943 NWD1Q149M9 1564 aa17.63■□□□□ 0.41
SCFD1-201ENST00000311943 ACIN1Q9UKV3 1341 aaKnown RBP17.62■□□□□ 0.41
SCFD1-201ENST00000311943 STK26Q9P289 416 aa17.62■□□□□ 0.41
SCFD1-201ENST00000311943 ASXL1Q8IXJ9 1541 aa17.61■□□□□ 0.41
SCFD1-201ENST00000311943 PIK3C2GO75747 1445 aa17.59■□□□□ 0.41
SCFD1-201ENST00000311943 ROBO2Q9HCK4 1378 aa17.59■□□□□ 0.41
SCFD1-201ENST00000311943 DIP2AQ14689 1571 aa17.58■□□□□ 0.41
SCFD1-201ENST00000311943 XRN1Q8IZH2 1706 aaKnown RBP17.58■□□□□ 0.4
SCFD1-201ENST00000311943 IQSEC2Q5JU85 1478 aa17.57■□□□□ 0.4
SCFD1-201ENST00000311943 WAPLQ7Z5K2 1190 aa17.57■□□□□ 0.4
SCFD1-201ENST00000311943 NKTRP30414 1462 aaKnown RBP17.56■□□□□ 0.4
SCFD1-201ENST00000311943 C14orf37Q86TY3 774 aa17.56■□□□□ 0.4
SCFD1-201ENST00000311943 PLEKHH1Q9ULM0 1364 aa17.55■□□□□ 0.4
SCFD1-201ENST00000311943 L3MBTL2Q969R5 705 aa17.55■□□□□ 0.4
SCFD1-201ENST00000311943 NRXN1Q9ULB1 1477 aa17.55■□□□□ 0.4
SCFD1-201ENST00000311943 PIK3R4Q99570 1358 aa17.54■□□□□ 0.4
SCFD1-201ENST00000311943 TOM1O60784 492 aa17.54■□□□□ 0.4
SCFD1-201ENST00000311943 C14orf93Q9H972 538 aaKnown RBP17.54■□□□□ 0.4
SCFD1-201ENST00000311943 HSPA1LP34931 641 aa17.53■□□□□ 0.4
SCFD1-201ENST00000311943 MYOM2P54296 1465 aa17.53■□□□□ 0.4
SCFD1-201ENST00000311943 SAFB2Q14151 953 aaKnown RBP eCLIP17.52■□□□□ 0.39
SCFD1-201ENST00000311943 NBPF1Q3BBV0 1214 aa17.51■□□□□ 0.39
SCFD1-201ENST00000311943 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.5■□□□□ 0.39
SCFD1-201ENST00000311943 MSH6P52701 1360 aa17.49■□□□□ 0.39
SCFD1-201ENST00000311943 NUTM2FA1L443 756 aa17.49■□□□□ 0.39
SCFD1-201ENST00000311943 NALCNQ8IZF0 1738 aa17.49■□□□□ 0.39
SCFD1-201ENST00000311943 TRAK1Q9UPV9 953 aa17.48■□□□□ 0.39
SCFD1-201ENST00000311943 YTHDC2Q9H6S0 1430 aaKnown RBP17.48■□□□□ 0.39
SCFD1-201ENST00000311943 DDX17Q92841 729 aaKnown RBP17.47■□□□□ 0.39
SCFD1-201ENST00000311943 C19orf44Q9H6X5 657 aa17.47■□□□□ 0.39
SCFD1-201ENST00000311943 SLAIN2Q9P270 581 aa17.47■□□□□ 0.39
SCFD1-201ENST00000311943 ADGRB1O14514 1584 aa17.47■□□□□ 0.39
SCFD1-201ENST00000311943 NBPF8Q3BBV2 869 aa17.46■□□□□ 0.39
SCFD1-201ENST00000311943 LRPPRCP42704 1394 aaKnown RBP17.46■□□□□ 0.39
SCFD1-201ENST00000311943 PRAM1Q96QH2 718 aa17.44■□□□□ 0.38
SCFD1-201ENST00000311943 ROBO1Q9Y6N7 1651 aa17.44■□□□□ 0.38
SCFD1-201ENST00000311943 PTCH1Q13635 1447 aa17.44■□□□□ 0.38
SCFD1-201ENST00000311943 PRAG1Q86YV5 1406 aa17.43■□□□□ 0.38
SCFD1-201ENST00000311943 ATF3P18847 181 aa17.43■□□□□ 0.38
SCFD1-201ENST00000311943 HIRIP3Q9BW71 556 aaPredicted RBP17.43■□□□□ 0.38
SCFD1-201ENST00000311943 ABCC11Q96J66 1382 aa17.43■□□□□ 0.38
SCFD1-201ENST00000311943 ADGRL3Q9HAR2 1447 aa17.42■□□□□ 0.38
SCFD1-201ENST00000311943 ORAI2Q96SN7 254 aa17.42■□□□□ 0.38
SCFD1-201ENST00000311943 TECPR2O15040 1411 aa17.4■□□□□ 0.38
SCFD1-201ENST00000311943 MST1RQ04912 1400 aa17.4■□□□□ 0.38
SCFD1-201ENST00000311943 BRINP3Q76B58 766 aa17.4■□□□□ 0.38
SCFD1-201ENST00000311943 CADPS2Q86UW7 1296 aa17.39■□□□□ 0.37
SCFD1-201ENST00000311943 NCOA3Q9Y6Q9 1424 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms