RNA–Protein interactions for RNA: ENST00000304494.9

CDKN2A-201, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 1 (best) BASIC

Gene CDKN2A, Length 1,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-201ENST00000304494 ABCF1Q8NE71 845 aaKnown RBP eCLIP39.69■■■■□ 3.94
CDKN2A-201ENST00000304494 LRRC7Q96NW7 1537 aa39.68■■■■□ 3.94
CDKN2A-201ENST00000304494 BCANQ96GW7 911 aa39.67■■■■□ 3.94
CDKN2A-201ENST00000304494 PLEKHG1Q9ULL1 1385 aa39.66■■■■□ 3.94
CDKN2A-201ENST00000304494 TOM1O60784 492 aa39.65■■■■□ 3.94
CDKN2A-201ENST00000304494 SLC26A8Q96RN1 970 aa39.65■■■■□ 3.94
CDKN2A-201ENST00000304494 TRPM2O94759 1503 aa39.6■■■■□ 3.93
CDKN2A-201ENST00000304494 SLC4A1APQ9BWU0 796 aaKnown RBP39.59■■■■□ 3.93
CDKN2A-201ENST00000304494 KCNA6P17658 529 aa39.57■■■■□ 3.93
CDKN2A-201ENST00000304494 CLTCL1P53675 1640 aa39.53■■■■□ 3.92
CDKN2A-201ENST00000304494 NUTM2DQ5VT03 806 aaPredicted RBP39.51■■■■□ 3.92
CDKN2A-201ENST00000304494 SCAF1Q9H7N4 1312 aaKnown RBP39.5■■■■□ 3.91
CDKN2A-201ENST00000304494 ACIN1Q9UKV3 1341 aaKnown RBP39.5■■■■□ 3.91
CDKN2A-201ENST00000304494 PIP4K2BP78356 416 aa39.5■■■■□ 3.91
CDKN2A-201ENST00000304494 SENP3Q9H4L4 574 aaPredicted RBP39.5■■■■□ 3.91
CDKN2A-201ENST00000304494 ZNF326Q5BKZ1 582 aaKnown RBP39.49■■■■□ 3.91
CDKN2A-201ENST00000304494 TBX22Q9Y458 520 aa39.49■■■■□ 3.91
CDKN2A-201ENST00000304494 NWD1Q149M9 1564 aa39.48■■■■□ 3.91
CDKN2A-201ENST00000304494 NKTRP30414 1462 aaKnown RBP39.47■■■■□ 3.91
CDKN2A-201ENST00000304494 DIP2AQ14689 1571 aa39.46■■■■□ 3.91
CDKN2A-201ENST00000304494 ALKQ9UM73 1620 aa39.43■■■■□ 3.9
CDKN2A-201ENST00000304494 ADAMTS13Q76LX8 1427 aa39.42■■■■□ 3.9
CDKN2A-201ENST00000304494 SETD5Q9C0A6 1442 aa39.42■■■■□ 3.9
CDKN2A-201ENST00000304494 PROSER2Q86WR7 435 aaPredicted RBP39.42■■■■□ 3.9
CDKN2A-201ENST00000304494 TMEM94Q12767 1356 aa39.42■■■■□ 3.9
CDKN2A-201ENST00000304494 KIF1BO60333 1816 aa39.42■■■■□ 3.9
CDKN2A-201ENST00000304494 XIRP1Q702N8 1843 aaKnown RBP39.4■■■■□ 3.9
CDKN2A-201ENST00000304494 CHD2O14647 1828 aaKnown RBP39.38■■■■□ 3.89
CDKN2A-201ENST00000304494 PIK3R4Q99570 1358 aa39.38■■■■□ 3.89
CDKN2A-201ENST00000304494 MPHOSPH9Q99550 1183 aa39.38■■■■□ 3.89
CDKN2A-201ENST00000304494 NEXMIFQ5QGS0 1516 aa39.34■■■■□ 3.89
CDKN2A-201ENST00000304494 SETBP1Q9Y6X0 1596 aa39.33■■■■□ 3.89
CDKN2A-201ENST00000304494 FOXD1Q16676 465 aa39.33■■■■□ 3.89
CDKN2A-201ENST00000304494 HSPA1LP34931 641 aa39.29■■■■□ 3.88
CDKN2A-201ENST00000304494 RBM33Q96EV2 1170 aaKnown RBP39.28■■■■□ 3.88
CDKN2A-201ENST00000304494 NRXN3Q9Y4C0 1643 aa39.27■■■■□ 3.88
CDKN2A-201ENST00000304494 CCDC144AA2RUR9 1427 aa39.26■■■■□ 3.88
CDKN2A-201ENST00000304494 RAB3GAP2Q9H2M9 1393 aa39.26■■■■□ 3.88
CDKN2A-201ENST00000304494 RPGRIP1LQ68CZ1 1315 aa39.26■■■■□ 3.88
CDKN2A-201ENST00000304494 MSH6P52701 1360 aa39.24■■■■□ 3.87
CDKN2A-201ENST00000304494 VGFO15240 615 aaPredicted RBP39.23■■■■□ 3.87
CDKN2A-201ENST00000304494 NCOA3Q9Y6Q9 1424 aa39.23■■■■□ 3.87
CDKN2A-201ENST00000304494 AMOTL2Q9Y2J4 779 aa39.2■■■■□ 3.87
CDKN2A-201ENST00000304494 PTPRUQ92729 1446 aa39.17■■■■□ 3.86
CDKN2A-201ENST00000304494 FAM135BQ49AJ0 1406 aa39.14■■■■□ 3.86
CDKN2A-201ENST00000304494 METP08581 1390 aa39.13■■■■□ 3.85
CDKN2A-201ENST00000304494 DISP3Q9P2K9 1392 aa39.13■■■■□ 3.85
CDKN2A-201ENST00000304494 C14orf37Q86TY3 774 aa39.12■■■■□ 3.85
CDKN2A-201ENST00000304494 PPLO60437 1756 aa39.11■■■■□ 3.85
CDKN2A-201ENST00000304494 XRN1Q8IZH2 1706 aaKnown RBP39.11■■■■□ 3.85
CDKN2A-201ENST00000304494 SPATA31E1Q6ZUB1 1445 aa39.09■■■■□ 3.85
CDKN2A-201ENST00000304494 HRCP23327 699 aa39.08■■■■□ 3.85
CDKN2A-201ENST00000304494 RGL3Q3MIN7 710 aa39.05■■■■□ 3.84
CDKN2A-201ENST00000304494 C19orf44Q9H6X5 657 aa39.05■■■■□ 3.84
CDKN2A-201ENST00000304494 SLAIN2Q9P270 581 aa39.05■■■■□ 3.84
CDKN2A-201ENST00000304494 ANKRD30BQ9BXX2 1392 aa39.02■■■■□ 3.84
CDKN2A-201ENST00000304494 ROBO1Q9Y6N7 1651 aa39.02■■■■□ 3.84
CDKN2A-201ENST00000304494 CADPS2Q86UW7 1296 aa39.01■■■■□ 3.84
CDKN2A-201ENST00000304494 ATF3P18847 181 aa38.99■■■■□ 3.83
CDKN2A-201ENST00000304494 SETD1AO15047 1707 aaKnown RBP38.98■■■■□ 3.83
CDKN2A-201ENST00000304494 SIPA1L2Q9P2F8 1722 aaPredicted RBP38.98■■■■□ 3.83
CDKN2A-201ENST00000304494 IFT172Q9UG01 1749 aa38.95■■■■□ 3.83
CDKN2A-201ENST00000304494 DCCP43146 1447 aa38.94■■■■□ 3.82
CDKN2A-201ENST00000304494 ADGRF5Q8IZF2 1346 aa38.93■■■■□ 3.82
CDKN2A-201ENST00000304494 PTCH1Q13635 1447 aa38.9■■■■□ 3.82
CDKN2A-201ENST00000304494 MED1Q15648 1581 aaPredicted RBP38.9■■■■□ 3.82
CDKN2A-201ENST00000304494 PRAG1Q86YV5 1406 aa38.89■■■■□ 3.82
CDKN2A-201ENST00000304494 ADGRL3Q9HAR2 1447 aa38.86■■■■□ 3.81
CDKN2A-201ENST00000304494 PIK3C2GO75747 1445 aa38.83■■■■□ 3.81
CDKN2A-201ENST00000304494 ROBO2Q9HCK4 1378 aa38.82■■■■□ 3.8
CDKN2A-201ENST00000304494 MYOM2P54296 1465 aa38.79■■■■□ 3.8
CDKN2A-201ENST00000304494 PHLPP1O60346 1717 aa38.78■■■■□ 3.8
CDKN2A-201ENST00000304494 NALCNQ8IZF0 1738 aa38.78■■■■□ 3.8
CDKN2A-201ENST00000304494 MST1RQ04912 1400 aa38.75■■■■□ 3.79
CDKN2A-201ENST00000304494 NRXN1Q9ULB1 1477 aa38.74■■■■□ 3.79
CDKN2A-201ENST00000304494 ILDR2Q71H61 639 aa38.72■■■■□ 3.79
CDKN2A-201ENST00000304494 BRINP3Q76B58 766 aa38.72■■■■□ 3.79
CDKN2A-201ENST00000304494 LRPPRCP42704 1394 aaKnown RBP38.71■■■■□ 3.79
CDKN2A-201ENST00000304494 AHDC1Q5TGY3 1603 aaPredicted RBP38.71■■■■□ 3.79
CDKN2A-201ENST00000304494 PHF23Q9BUL5 403 aaPredicted RBP38.7■■■■□ 3.79
CDKN2A-201ENST00000304494 TECPR2O15040 1411 aa38.7■■■■□ 3.79
CDKN2A-201ENST00000304494 C14orf93Q9H972 538 aaKnown RBP38.69■■■■□ 3.78
CDKN2A-201ENST00000304494 LAMC1P11047 1609 aa38.68■■■■□ 3.78
CDKN2A-201ENST00000304494 STK26Q9P289 416 aa38.68■■■■□ 3.78
CDKN2A-201ENST00000304494 ABCC11Q96J66 1382 aa38.68■■■■□ 3.78
CDKN2A-201ENST00000304494 ASXL1Q8IXJ9 1541 aa38.68■■■■□ 3.78
CDKN2A-201ENST00000304494 COL16A1Q07092 1604 aaPredicted RBP38.67■■■■□ 3.78
CDKN2A-201ENST00000304494 TMEM132EQ6IEE7 984 aa38.67■■■■□ 3.78
CDKN2A-201ENST00000304494 JCADQ9P266 1359 aa38.66■■■■□ 3.78
CDKN2A-201ENST00000304494 YTHDC2Q9H6S0 1430 aaKnown RBP38.63■■■■□ 3.78
CDKN2A-201ENST00000304494 KNDC1Q76NI1 1749 aa38.63■■■■□ 3.78
CDKN2A-201ENST00000304494 STAC3Q96MF2 364 aa38.62■■■■□ 3.77
CDKN2A-201ENST00000304494 CFAP70Q5T0N1 1121 aa38.61■■■■□ 3.77
CDKN2A-201ENST00000304494 C1orf167Q5SNV9 1468 aa38.6■■■■□ 3.77
CDKN2A-201ENST00000304494 DHX57Q6P158 1386 aaKnown RBP38.59■■■■□ 3.77
CDKN2A-201ENST00000304494 DCAF11Q8TEB1 546 aa38.59■■■■□ 3.77
CDKN2A-201ENST00000304494 WAPLQ7Z5K2 1190 aa38.56■■■■□ 3.76
CDKN2A-201ENST00000304494 CDC42BPGQ6DT37 1551 aa38.56■■■■□ 3.76
CDKN2A-201ENST00000304494 SIRT1Q96EB6 747 aa38.55■■■■□ 3.76
CDKN2A-201ENST00000304494 NHSL1Q5SYE7 1610 aa38.54■■■■□ 3.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms