RNA–Protein interactions for RNA: ENST00000223084.7

LSM5-201, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 1,295 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-201ENST00000223084 CERKQ8TCT0 537 aa18.84■□□□□ 0.61
LSM5-201ENST00000223084 CLTCL1P53675 1640 aa18.84■□□□□ 0.61
LSM5-201ENST00000223084 TRPM2O94759 1503 aa18.84■□□□□ 0.61
LSM5-201ENST00000223084 NUTM2DQ5VT03 806 aaPredicted RBP18.83■□□□□ 0.6
LSM5-201ENST00000223084 RIMS2Q9UQ26 1411 aa18.83■□□□□ 0.6
LSM5-201ENST00000223084 LTBP4Q8N2S1 1624 aa18.82■□□□□ 0.6
LSM5-201ENST00000223084 ZFYVE9O95405 1425 aa18.81■□□□□ 0.6
LSM5-201ENST00000223084 ACIN1Q9UKV3 1341 aaKnown RBP18.8■□□□□ 0.6
LSM5-201ENST00000223084 PPP1R15AO75807 674 aaPredicted RBP18.78■□□□□ 0.6
LSM5-201ENST00000223084 ZNF326Q5BKZ1 582 aaKnown RBP18.78■□□□□ 0.6
LSM5-201ENST00000223084 BCANQ96GW7 911 aa18.78■□□□□ 0.6
LSM5-201ENST00000223084 HRCP23327 699 aa18.77■□□□□ 0.6
LSM5-201ENST00000223084 HDGFP51858 240 aaKnown RBP18.77■□□□□ 0.6
LSM5-201ENST00000223084 SLC26A8Q96RN1 970 aa18.77■□□□□ 0.6
LSM5-201ENST00000223084 KIF1BO60333 1816 aa18.77■□□□□ 0.59
LSM5-201ENST00000223084 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.76■□□□□ 0.59
LSM5-201ENST00000223084 PLEKHG1Q9ULL1 1385 aa18.74■□□□□ 0.59
LSM5-201ENST00000223084 STRCP1A6NGW2 1772 aa18.73■□□□□ 0.59
LSM5-201ENST00000223084 CCDC144AA2RUR9 1427 aa18.72■□□□□ 0.59
LSM5-201ENST00000223084 NEXMIFQ5QGS0 1516 aa18.69■□□□□ 0.58
LSM5-201ENST00000223084 TRIM26Q12899 539 aaPredicted RBP18.69■□□□□ 0.58
LSM5-201ENST00000223084 CPS1P31327 1500 aa18.69■□□□□ 0.58
LSM5-201ENST00000223084 RGL3Q3MIN7 710 aa18.68■□□□□ 0.58
LSM5-201ENST00000223084 ADAMTS13Q76LX8 1427 aa18.67■□□□□ 0.58
LSM5-201ENST00000223084 ANKRD30BQ9BXX2 1392 aa18.67■□□□□ 0.58
LSM5-201ENST00000223084 KCNA6P17658 529 aa18.65■□□□□ 0.58
LSM5-201ENST00000223084 TBX22Q9Y458 520 aa18.65■□□□□ 0.58
LSM5-201ENST00000223084 SPATA31E1Q6ZUB1 1445 aa18.65■□□□□ 0.58
LSM5-201ENST00000223084 RPGRIP1LQ68CZ1 1315 aa18.64■□□□□ 0.57
LSM5-201ENST00000223084 IQSEC2Q5JU85 1478 aa18.64■□□□□ 0.57
LSM5-201ENST00000223084 LRRC7Q96NW7 1537 aa18.64■□□□□ 0.57
LSM5-201ENST00000223084 NRXN3Q9Y4C0 1643 aa18.63■□□□□ 0.57
LSM5-201ENST00000223084 VGFO15240 615 aaPredicted RBP18.62■□□□□ 0.57
LSM5-201ENST00000223084 PPLO60437 1756 aa18.62■□□□□ 0.57
LSM5-201ENST00000223084 RBM33Q96EV2 1170 aaKnown RBP18.61■□□□□ 0.57
LSM5-201ENST00000223084 SETBP1Q9Y6X0 1596 aa18.6■□□□□ 0.57
LSM5-201ENST00000223084 UBAP1LF5GYI3 381 aa18.6■□□□□ 0.57
LSM5-201ENST00000223084 CHD2O14647 1828 aaKnown RBP18.6■□□□□ 0.57
LSM5-201ENST00000223084 DIP2AQ14689 1571 aa18.59■□□□□ 0.57
LSM5-201ENST00000223084 ADGRF5Q8IZF2 1346 aa18.59■□□□□ 0.57
LSM5-201ENST00000223084 PROSER2Q86WR7 435 aaPredicted RBP18.59■□□□□ 0.57
LSM5-201ENST00000223084 NWD1Q149M9 1564 aa18.58■□□□□ 0.56
LSM5-201ENST00000223084 PTPRUQ92729 1446 aa18.57■□□□□ 0.56
LSM5-201ENST00000223084 METP08581 1390 aa18.57■□□□□ 0.56
LSM5-201ENST00000223084 XIRP1Q702N8 1843 aaKnown RBP18.57■□□□□ 0.56
LSM5-201ENST00000223084 TMEM94Q12767 1356 aa18.56■□□□□ 0.56
LSM5-201ENST00000223084 AMOTL2Q9Y2J4 779 aa18.56■□□□□ 0.56
LSM5-201ENST00000223084 PIK3R4Q99570 1358 aa18.55■□□□□ 0.56
LSM5-201ENST00000223084 IFT172Q9UG01 1749 aa18.55■□□□□ 0.56
LSM5-201ENST00000223084 NKTRP30414 1462 aaKnown RBP18.54■□□□□ 0.56
LSM5-201ENST00000223084 ALKQ9UM73 1620 aa18.53■□□□□ 0.56
LSM5-201ENST00000223084 TOM1O60784 492 aa18.52■□□□□ 0.56
LSM5-201ENST00000223084 SETD1AO15047 1707 aaKnown RBP18.52■□□□□ 0.55
LSM5-201ENST00000223084 PIP4K2BP78356 416 aa18.51■□□□□ 0.55
LSM5-201ENST00000223084 SCAF1Q9H7N4 1312 aaKnown RBP18.5■□□□□ 0.55
LSM5-201ENST00000223084 KDM2AQ9Y2K7 1162 aa18.5■□□□□ 0.55
LSM5-201ENST00000223084 DHX57Q6P158 1386 aaKnown RBP18.5■□□□□ 0.55
LSM5-201ENST00000223084 XRN1Q8IZH2 1706 aaKnown RBP18.49■□□□□ 0.55
LSM5-201ENST00000223084 DCAF11Q8TEB1 546 aa18.48■□□□□ 0.55
LSM5-201ENST00000223084 PIK3C2GO75747 1445 aa18.48■□□□□ 0.55
LSM5-201ENST00000223084 SIN3AQ96ST3 1273 aa18.47■□□□□ 0.55
LSM5-201ENST00000223084 MYOM2P54296 1465 aa18.46■□□□□ 0.55
LSM5-201ENST00000223084 C14orf37Q86TY3 774 aa18.46■□□□□ 0.55
LSM5-201ENST00000223084 PCGF6Q9BYE7 350 aa18.46■□□□□ 0.55
LSM5-201ENST00000223084 NRXN1Q9ULB1 1477 aa18.46■□□□□ 0.54
LSM5-201ENST00000223084 CFAP70Q5T0N1 1121 aa18.45■□□□□ 0.54
LSM5-201ENST00000223084 TMEM132EQ6IEE7 984 aa18.45■□□□□ 0.54
LSM5-201ENST00000223084 MSH6P52701 1360 aa18.43■□□□□ 0.54
LSM5-201ENST00000223084 NEUROD1Q13562 356 aa18.43■□□□□ 0.54
LSM5-201ENST00000223084 C14orf93Q9H972 538 aaKnown RBP18.43■□□□□ 0.54
LSM5-201ENST00000223084 STK26Q9P289 416 aa18.43■□□□□ 0.54
LSM5-201ENST00000223084 NCOA3Q9Y6Q9 1424 aa18.42■□□□□ 0.54
LSM5-201ENST00000223084 ASXL1Q8IXJ9 1541 aa18.42■□□□□ 0.54
LSM5-201ENST00000223084 ROBO2Q9HCK4 1378 aa18.42■□□□□ 0.54
LSM5-201ENST00000223084 C19orf44Q9H6X5 657 aa18.39■□□□□ 0.53
LSM5-201ENST00000223084 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.39■□□□□ 0.53
LSM5-201ENST00000223084 LRPPRCP42704 1394 aaKnown RBP18.39■□□□□ 0.53
LSM5-201ENST00000223084 PTCH1Q13635 1447 aa18.39■□□□□ 0.53
LSM5-201ENST00000223084 HSPA1LP34931 641 aa18.38■□□□□ 0.53
LSM5-201ENST00000223084 YTHDC2Q9H6S0 1430 aaKnown RBP18.37■□□□□ 0.53
LSM5-201ENST00000223084 LAMC1P11047 1609 aa18.36■□□□□ 0.53
LSM5-201ENST00000223084 ATF3P18847 181 aa18.36■□□□□ 0.53
LSM5-201ENST00000223084 WAPLQ7Z5K2 1190 aa18.36■□□□□ 0.53
LSM5-201ENST00000223084 PRAG1Q86YV5 1406 aa18.36■□□□□ 0.53
LSM5-201ENST00000223084 L3MBTL2Q969R5 705 aa18.36■□□□□ 0.53
LSM5-201ENST00000223084 STAC3Q96MF2 364 aa18.36■□□□□ 0.53
LSM5-201ENST00000223084 SLAIN2Q9P270 581 aa18.36■□□□□ 0.53
LSM5-201ENST00000223084 ABCC11Q96J66 1382 aa18.35■□□□□ 0.53
LSM5-201ENST00000223084 CADPS2Q86UW7 1296 aa18.35■□□□□ 0.53
LSM5-201ENST00000223084 ADGRL3Q9HAR2 1447 aa18.34■□□□□ 0.53
LSM5-201ENST00000223084 NALCNQ8IZF0 1738 aa18.34■□□□□ 0.53
LSM5-201ENST00000223084 TECPR2O15040 1411 aa18.33■□□□□ 0.53
LSM5-201ENST00000223084 PLEKHH1Q9ULM0 1364 aa18.33■□□□□ 0.53
LSM5-201ENST00000223084 FAM135BQ49AJ0 1406 aa18.32■□□□□ 0.52
LSM5-201ENST00000223084 KNDC1Q76NI1 1749 aa18.32■□□□□ 0.52
LSM5-201ENST00000223084 ADGRB1O14514 1584 aa18.32■□□□□ 0.52
LSM5-201ENST00000223084 ROBO1Q9Y6N7 1651 aa18.31■□□□□ 0.52
LSM5-201ENST00000223084 TRAK1Q9UPV9 953 aa18.3■□□□□ 0.52
LSM5-201ENST00000223084 DCCP43146 1447 aa18.3■□□□□ 0.52
LSM5-201ENST00000223084 SAFB2Q14151 953 aaKnown RBP eCLIP18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms