RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C ACC1Q00955 2233 aaKnown RBP0.01□□□□□ -2.41
NIP1YMR309C FMP49A0A023PZB3 126 aa0.01□□□□□ -2.41
NIP1YMR309C YLR236CA0A023PZG4 107 aa0.01□□□□□ -2.41
NIP1YMR309C TIM9O74700 87 aa0.01□□□□□ -2.41
NIP1YMR309C TCP1P12612 559 aaKnown RBP0.01□□□□□ -2.41
NIP1YMR309C POL30P15873 258 aaKnown RBP0.01□□□□□ -2.41
NIP1YMR309C SRB4P32569 687 aa0.01□□□□□ -2.41
NIP1YMR309C MRPL17P36528 281 aa0.01□□□□□ -2.41
NIP1YMR309C CUE1P38428 203 aa0.01□□□□□ -2.41
NIP1YMR309C TVP23P38962 199 aa0.01□□□□□ -2.41
NIP1YMR309C FLX1P40464 311 aa0.01□□□□□ -2.41
NIP1YMR309C HYR1P40581 163 aaKnown RBP0.01□□□□□ -2.41
NIP1YMR309C YFL065CP43539 102 aa0.01□□□□□ -2.41
NIP1YMR309C YAE1P47118 141 aaPredicted RBP0.01□□□□□ -2.41
NIP1YMR309C CWC27Q02770 301 aa0.01□□□□□ -2.41
NIP1YMR309C SWP1Q02795 286 aa0.01□□□□□ -2.41
NIP1YMR309C SDO1Q07953 250 aaKnown RBP0.01□□□□□ -2.41
NIP1YMR309C YOL160WQ08321 113 aa0.01□□□□□ -2.41
NIP1YMR309C CSM4Q08955 156 aa0.01□□□□□ -2.41
NIP1YMR309C MSH5Q12175 901 aa0.01□□□□□ -2.41
NIP1YMR309C REP2P03872 296 aa0.01□□□□□ -2.41
NIP1YMR309C MSF1P08425 469 aa0.01□□□□□ -2.41
NIP1YMR309C OM45P16547 393 aa0.01□□□□□ -2.41
NIP1YMR309C CDC10P25342 322 aaKnown RBP0.01□□□□□ -2.41
NIP1YMR309C YCL042WP25572 119 aa0.01□□□□□ -2.41
NIP1YMR309C YHL042WP38729 150 aa0.01□□□□□ -2.41
NIP1YMR309C PET100P38958 111 aa0.01□□□□□ -2.41
NIP1YMR309C PEX17P40155 199 aa0.01□□□□□ -2.41
NIP1YMR309C GVP36P40531 326 aaKnown RBP0.01□□□□□ -2.41
NIP1YMR309C GPM2Q12008 311 aa0.01□□□□□ -2.41
NIP1YMR309C FSF1Q12029 327 aaKnown RBP0.01□□□□□ -2.41
NIP1YMR309C TDA8Q6B2U8 126 aa0.01□□□□□ -2.41
NIP1YMR309C SEC11P15367 167 aa0□□□□□ -2.41
NIP1YMR309C MRPL25P23369 157 aa0□□□□□ -2.41
NIP1YMR309C YBR285WP38354 144 aa0□□□□□ -2.41
NIP1YMR309C AST2P39945 430 aaKnown RBP0□□□□□ -2.41
NIP1YMR309C BNA6P43619 295 aa0□□□□□ -2.41
NIP1YMR309C YAR1P46683 200 aa0□□□□□ -2.41
NIP1YMR309C TRM9P49957 279 aa0□□□□□ -2.41
NIP1YMR309C ERV25P54837 211 aaKnown RBP0□□□□□ -2.41
NIP1YMR309C MDM35O60200 86 aa-0.01□□□□□ -2.41
NIP1YMR309C VPS21P36017 210 aaKnown RBP-0.01□□□□□ -2.41
NIP1YMR309C YKL075CP36083 450 aa-0.01□□□□□ -2.41
NIP1YMR309C RMD6P39975 231 aa-0.01□□□□□ -2.41
NIP1YMR309C IRC22P40006 225 aa-0.01□□□□□ -2.41
NIP1YMR309C YPL073CP40323 161 aa-0.01□□□□□ -2.41
NIP1YMR309C MCM22P47167 239 aa-0.01□□□□□ -2.41
NIP1YMR309C PRM8P53174 237 aa-0.01□□□□□ -2.41
NIP1YMR309C YNL247WP53852 767 aaKnown RBP-0.01□□□□□ -2.41
NIP1YMR309C YPR174CQ06616 221 aaPredicted RBP-0.01□□□□□ -2.41
NIP1YMR309C YRA1Q12159 226 aaKnown RBP-0.01□□□□□ -2.41
NIP1YMR309C MGM101P32787 269 aaKnown RBP-0.01□□□□□ -2.41
NIP1YMR309C PTM1P32857 523 aa-0.01□□□□□ -2.41
NIP1YMR309C YIL102CP40488 101 aa-0.01□□□□□ -2.41
NIP1YMR309C DID2P69771 204 aa-0.01□□□□□ -2.41
NIP1YMR309C YDR274CP87283 123 aa-0.01□□□□□ -2.41
NIP1YMR309C SED1Q01589 338 aa-0.01□□□□□ -2.41
NIP1YMR309C DIG2Q03373 323 aaKnown RBP-0.01□□□□□ -2.41
NIP1YMR309C PAM18Q07914 168 aa-0.01□□□□□ -2.41
NIP1YMR309C YPL229WQ99395 206 aa-0.01□□□□□ -2.41
NIP1YMR309C BCY1P07278 416 aaKnown RBP-0.02□□□□□ -2.41
NIP1YMR309C URA5P13298 226 aaKnown RBP-0.02□□□□□ -2.41
NIP1YMR309C URA6P15700 204 aa-0.02□□□□□ -2.41
NIP1YMR309C AHT1P29589 182 aa-0.02□□□□□ -2.41
NIP1YMR309C UGX2P32772 223 aa-0.02□□□□□ -2.41
NIP1YMR309C SHE2P36068 246 aaKnown RBP RIP-Chip data-0.02□□□□□ -2.41not detected
NIP1YMR309C YEA4P40004 342 aa-0.02□□□□□ -2.41
NIP1YMR309C YFH7P43591 353 aa-0.02□□□□□ -2.41
NIP1YMR309C HOC1P47124 396 aa-0.02□□□□□ -2.41
NIP1YMR309C FYV6P53913 173 aa-0.02□□□□□ -2.41
NIP1YMR309C KRE28Q04431 385 aa-0.02□□□□□ -2.41
NIP1YMR309C YMR226CQ05016 267 aaKnown RBP-0.02□□□□□ -2.41
NIP1YMR309C CDC123Q05791 360 aa-0.02□□□□□ -2.41
NIP1YMR309C LCL2Q08045 131 aa-0.02□□□□□ -2.41
NIP1YMR309C PRP8P33334 2413 aaKnown RBP-0.02□□□□□ -2.41
NIP1YMR309C CDC28P00546 298 aaKnown RBP-0.02□□□□□ -2.41
NIP1YMR309C BET1P22804 142 aa-0.02□□□□□ -2.41
NIP1YMR309C UPS3Q04006 179 aa-0.02□□□□□ -2.41
NIP1YMR309C YLR173WQ06247 608 aa-0.02□□□□□ -2.41
NIP1YMR309C MCP1Q12106 302 aa-0.02□□□□□ -2.41
NIP1YMR309C KSS1P14681 368 aa-0.03□□□□□ -2.41
NIP1YMR309C CKS1P20486 150 aaKnown RBP-0.03□□□□□ -2.41
NIP1YMR309C SSO1P32867 290 aa-0.03□□□□□ -2.41
NIP1YMR309C APS1P35181 156 aa-0.03□□□□□ -2.41
NIP1YMR309C UTP30P36144 274 aaKnown RBP-0.03□□□□□ -2.41
NIP1YMR309C VMA22P38784 181 aa-0.03□□□□□ -2.41
NIP1YMR309C YAR064WP39563 99 aa-0.03□□□□□ -2.41
NIP1YMR309C COX15P40086 486 aa-0.03□□□□□ -2.41
NIP1YMR309C FAR7P43592 221 aa-0.03□□□□□ -2.41
NIP1YMR309C YJR149WP47177 404 aa-0.03□□□□□ -2.41
NIP1YMR309C BXI1P48558 297 aa-0.03□□□□□ -2.41
NIP1YMR309C YLR460CP54007 376 aa-0.03□□□□□ -2.41
NIP1YMR309C YMR252CQ04814 134 aa-0.03□□□□□ -2.41
NIP1YMR309C CFT1Q06632 1357 aaKnown RBP-0.03□□□□□ -2.41
NIP1YMR309C RPL28P02406 149 aaKnown RBP-0.03□□□□□ -2.41
NIP1YMR309C RPL27AP0C2H6 136 aaKnown RBP-0.03□□□□□ -2.41
NIP1YMR309C PRX1P34227 261 aaKnown RBP-0.03□□□□□ -2.41
NIP1YMR309C LDB7P38210 180 aa-0.03□□□□□ -2.41
NIP1YMR309C YEL008WP40001 126 aa-0.03□□□□□ -2.41
NIP1YMR309C YER034WP40022 185 aaKnown RBP-0.03□□□□□ -2.41
Retrieved 100 of 5,963 RNA–protein pairs in 25.6 ms