RNA–Protein interactions for RNA: YDR179C

CSN9, Transcript of Subunit of the Cop9 signalosome, yeast

Gene CSN9, Length 489 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CSN9	YDR179C	LPP1	Q04396	274 aa		0.12	□□□□□ -2.39
CSN9	YDR179C	COX20	Q04935	205 aa		0.12	□□□□□ -2.39
CSN9	YDR179C	FMP49	A0A023PZB3	126 aa		0.11	□□□□□ -2.39
CSN9	YDR179C	SEC11	P15367	167 aa		0.11	□□□□□ -2.39
CSN9	YDR179C	RPT5	P33297	434 aa	Known RBP	0.11	□□□□□ -2.39
CSN9	YDR179C	POP4	P38336	279 aa		0.11	□□□□□ -2.39
CSN9	YDR179C	DOG2	P38773	246 aa		0.11	□□□□□ -2.39
CSN9	YDR179C	GVP36	P40531	326 aa	Known RBP	0.11	□□□□□ -2.39
CSN9	YDR179C	HYR1	P40581	163 aa	Known RBP	0.11	□□□□□ -2.39
CSN9	YDR179C	SLH1	P53327	1967 aa	Known RBP	0.1	□□□□□ -2.39
CSN9	YDR179C	PRX1	P34227	261 aa	Known RBP	0.1	□□□□□ -2.39
CSN9	YDR179C	YBR285W	P38354	144 aa		0.1	□□□□□ -2.39
CSN9	YDR179C	URA8	P38627	578 aa	Predicted RBP	0.1	□□□□□ -2.39
CSN9	YDR179C	EAF6	P47128	113 aa		0.1	□□□□□ -2.39
CSN9	YDR179C	MCM22	P47167	239 aa		0.1	□□□□□ -2.39
CSN9	YDR179C	SDO1	Q07953	250 aa	Known RBP	0.1	□□□□□ -2.39
CSN9	YDR179C	YPL229W	Q99395	206 aa		0.1	□□□□□ -2.39
CSN9	YDR179C	PRP8	P33334	2413 aa	Known RBP	0.09	□□□□□ -2.39
CSN9	YDR179C	YLR156W	P0CE96	114 aa		0.09	□□□□□ -2.4
CSN9	YDR179C	YLR159W	P0CE97	114 aa		0.09	□□□□□ -2.4
CSN9	YDR179C	YLR161W	P0CE98	114 aa		0.09	□□□□□ -2.4
CSN9	YDR179C	POL30	P15873	258 aa	Known RBP	0.09	□□□□□ -2.4
CSN9	YDR179C	DBF2	P22204	572 aa		0.09	□□□□□ -2.4
CSN9	YDR179C	SRB4	P32569	687 aa		0.09	□□□□□ -2.4
CSN9	YDR179C	ECM4	P36156	370 aa		0.09	□□□□□ -2.4
CSN9	YDR179C	SKG1	P36169	355 aa		0.09	□□□□□ -2.4
CSN9	YDR179C	PRE6	P40303	254 aa	Known RBP	0.09	□□□□□ -2.4
CSN9	YDR179C	YFH7	P43591	353 aa		0.09	□□□□□ -2.4
CSN9	YDR179C	RAD28	Q12021	506 aa		0.09	□□□□□ -2.4
CSN9	YDR179C	YLR126C	Q12288	251 aa		0.09	□□□□□ -2.4
CSN9	YDR179C	MDM35	O60200	86 aa		0.08	□□□□□ -2.4
CSN9	YDR179C	TIM9	O74700	87 aa		0.08	□□□□□ -2.4
CSN9	YDR179C	SIR2	P06700	562 aa		0.08	□□□□□ -2.4
CSN9	YDR179C	YER034W	P40022	185 aa	Known RBP	0.08	□□□□□ -2.4
CSN9	YDR179C	ACC1	Q00955	2233 aa	Known RBP	0.07	□□□□□ -2.4
CSN9	YDR179C	PRM8	P53174	237 aa		0.07	□□□□□ -2.4
CSN9	YDR179C	YMR252C	Q04814	134 aa		0.07	□□□□□ -2.4
CSN9	YDR179C	MSF1	P08425	469 aa		0.06	□□□□□ -2.4
CSN9	YDR179C	CDC10	P25342	322 aa	Known RBP	0.06	□□□□□ -2.4
CSN9	YDR179C	MRPL37	P36532	105 aa		0.06	□□□□□ -2.4
CSN9	YDR179C	YJR149W	P47177	404 aa		0.06	□□□□□ -2.4
CSN9	YDR179C	ERV25	P54837	211 aa	Known RBP	0.06	□□□□□ -2.4
CSN9	YDR179C	YPR174C	Q06616	221 aa	Predicted RBP	0.06	□□□□□ -2.4
CSN9	YDR179C	RTT105	P40063	208 aa		0.05	□□□□□ -2.4
CSN9	YDR179C	DIG2	Q03373	323 aa	Known RBP	0.05	□□□□□ -2.4
CSN9	YDR179C	CUE1	P38428	203 aa		0.04	□□□□□ -2.4
CSN9	YDR179C	VMA22	P38784	181 aa		0.04	□□□□□ -2.4
CSN9	YDR179C	HPA3	P39979	161 aa		0.04	□□□□□ -2.4
CSN9	YDR179C	YIL102C	P40488	101 aa		0.04	□□□□□ -2.4
CSN9	YDR179C	KRE28	Q04431	385 aa		0.04	□□□□□ -2.4
CSN9	YDR179C	URA5	P13298	226 aa	Known RBP	0.03	□□□□□ -2.4
CSN9	YDR179C	MRPL15	P36523	253 aa		0.03	□□□□□ -2.4
CSN9	YDR179C	HOC1	P47124	396 aa		0.03	□□□□□ -2.4
CSN9	YDR179C	NSA1	P53136	463 aa	Predicted RBP	0.03	□□□□□ -2.4
CSN9	YDR179C	MRPL50	P53724	139 aa		0.03	□□□□□ -2.4
CSN9	YDR179C	YLR460C	P54007	376 aa		0.03	□□□□□ -2.4
CSN9	YDR179C	SED1	Q01589	338 aa		0.03	□□□□□ -2.4
CSN9	YDR179C	YRA1	Q12159	226 aa	Known RBP	0.03	□□□□□ -2.4
CSN9	YDR179C	SPT3	P06844	337 aa		0.02	□□□□□ -2.41
CSN9	YDR179C	BCY1	P07278	416 aa	Known RBP	0.02	□□□□□ -2.41
CSN9	YDR179C	YCL042W	P25572	119 aa		0.02	□□□□□ -2.41
CSN9	YDR179C	YPL073C	P40323	161 aa		0.02	□□□□□ -2.41
CSN9	YDR179C	CDC123	Q05791	360 aa		0.02	□□□□□ -2.41
CSN9	YDR179C	MCP1	Q12106	302 aa		0.02	□□□□□ -2.41
CSN9	YDR179C	COA3	Q3E7B2	85 aa		0.02	□□□□□ -2.41
CSN9	YDR179C	TDA8	Q6B2U8	126 aa		0.02	□□□□□ -2.41
CSN9	YDR179C	MRPL25	P23369	157 aa		0.01	□□□□□ -2.41
CSN9	YDR179C	UBC8	P28263	218 aa		0.01	□□□□□ -2.41
CSN9	YDR179C	SEC17	P32602	292 aa		0.01	□□□□□ -2.41
CSN9	YDR179C	YDR391C	Q04170	232 aa		0.01	□□□□□ -2.41
CSN9	YDR179C	YMR226C	Q05016	267 aa	Known RBP	0.01	□□□□□ -2.41
CSN9	YDR179C	DRS2	P39524	1355 aa		0.01	□□□□□ -2.41
CSN9	YDR179C	TCP1	P12612	559 aa	Known RBP	0	□□□□□ -2.41
CSN9	YDR179C	OM45	P16547	393 aa		0	□□□□□ -2.41
CSN9	YDR179C	BET1	P22804	142 aa		0	□□□□□ -2.41
CSN9	YDR179C	RPB7	P34087	171 aa		0	□□□□□ -2.41
CSN9	YDR179C	YEL008W	P40001	126 aa		0	□□□□□ -2.41
CSN9	YDR179C	TRM9	P49957	279 aa		0	□□□□□ -2.41
CSN9	YDR179C	NUP84	P52891	726 aa		0	□□□□□ -2.41
CSN9	YDR179C	YDR274C	P87283	123 aa		0	□□□□□ -2.41
CSN9	YDR179C	UPS3	Q04006	179 aa		0	□□□□□ -2.41
CSN9	YDR179C	YLR173W	Q06247	608 aa		0	□□□□□ -2.41
CSN9	YDR179C	FAR7	P43592	221 aa		-0.01	□□□□□ -2.41
CSN9	YDR179C	UBC12	P52491	188 aa		-0.01	□□□□□ -2.41
CSN9	YDR179C	DAD4	P69851	72 aa		-0.01	□□□□□ -2.41
CSN9	YDR179C	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	-0.01	□□□□□ -2.41	not detected
CSN9	YDR179C	YPR203W	Q08994	102 aa		-0.01	□□□□□ -2.41
CSN9	YDR179C	RPL27A	P0C2H6	136 aa	Known RBP	-0.02	□□□□□ -2.41
CSN9	YDR179C	KSS1	P14681	368 aa		-0.02	□□□□□ -2.41
CSN9	YDR179C	AHT1	P29589	182 aa		-0.02	□□□□□ -2.41
CSN9	YDR179C	AIM25	P47140	327 aa		-0.02	□□□□□ -2.41
CSN9	YDR179C	YDR249C	Q03787	373 aa		-0.02	□□□□□ -2.41
CSN9	YDR179C	BNA7	Q04066	261 aa		-0.02	□□□□□ -2.41
CSN9	YDR179C	PAM18	Q07914	168 aa		-0.02	□□□□□ -2.41
CSN9	YDR179C	URA6	P15700	204 aa		-0.03	□□□□□ -2.41
CSN9	YDR179C	TCA17	P32613	152 aa		-0.03	□□□□□ -2.41
CSN9	YDR179C	MGM101	P32787	269 aa	Known RBP	-0.03	□□□□□ -2.41
CSN9	YDR179C	NTF2	P33331	125 aa	Known RBP	-0.03	□□□□□ -2.41
CSN9	YDR179C	UTP30	P36144	274 aa	Known RBP	-0.03	□□□□□ -2.41
CSN9	YDR179C	YBR242W	P38331	238 aa		-0.03	□□□□□ -2.41

Retrieved 100 of 5,963 RNA–protein pairs in 47 ms