RNA–Protein interactions for RNA: YDL060W

TSR1, Transcript of Protein required for processing of 20S pre-rRNA in the cytoplasm, yeast

Gene TSR1, Length 2,367 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TSR1	YDL060W	YDR209C	Q03480	137 aa		3.2	□□□□□ -1.9
TSR1	YDL060W	YDR415C	Q04033	374 aa	Predicted RBP	3.2	□□□□□ -1.9
TSR1	YDL060W	RTT103	Q05543	409 aa		3.2	□□□□□ -1.9
TSR1	YDL060W	YOL131W	Q08270	108 aa		3.2	□□□□□ -1.9
TSR1	YDL060W	DDC1	Q08949	612 aa		3.2	□□□□□ -1.9
TSR1	YDL060W	RPL4A	P10664	362 aa	Known RBP	3.2	□□□□□ -1.9
TSR1	YDL060W	AAT2	P23542	418 aa	Known RBP	3.2	□□□□□ -1.9
TSR1	YDL060W	HTD2	P38790	280 aa	Known RBP	3.2	□□□□□ -1.9
TSR1	YDL060W	TES1	P41903	349 aa	Known RBP	3.2	□□□□□ -1.9
TSR1	YDL060W	PRM10	P42946	383 aa		3.2	□□□□□ -1.9
TSR1	YDL060W	RRT5	P43607	289 aa		3.2	□□□□□ -1.9
TSR1	YDL060W	AIM25	P47140	327 aa		3.2	□□□□□ -1.9
TSR1	YDL060W	RPL4B	P49626	362 aa	Known RBP	3.2	□□□□□ -1.9
TSR1	YDL060W	UFD1	P53044	361 aa		3.2	□□□□□ -1.9
TSR1	YDL060W	SYF2	P53277	215 aa	Predicted RBP	3.2	□□□□□ -1.9
TSR1	YDL060W	YLR179C	Q06252	201 aa	Known RBP	3.2	□□□□□ -1.9
TSR1	YDL060W	IZH4	Q99393	312 aa		3.2	□□□□□ -1.9
TSR1	YDL060W	FUN14	P18411	198 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	RNA15	P25299	296 aa	Predicted RBP	3.19	□□□□□ -1.9
TSR1	YDL060W	YCR022C	P25620	114 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	YKL187C	P34231	750 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	YPC1	P38298	316 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	TRS20	P38334	175 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	YIL169C	P40442	995 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	CDH1	P53197	566 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	SHY1	P53266	389 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	CGI121	Q03705	181 aa	Known RBP	3.19	□□□□□ -1.9
TSR1	YDL060W	YOL019W	Q08157	551 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	CSM4	Q08955	156 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	SCL1	P21243	252 aa	Known RBP	3.19	□□□□□ -1.9
TSR1	YDL060W	RPL16B	P26785	198 aa	Known RBP	3.19	□□□□□ -1.9
TSR1	YDL060W	MBA1	P38300	278 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	RMD6	P39975	231 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	MOG1	P47123	218 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	MTM1	P53320	366 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	GMC1	Q04399	608 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	NMA1	Q06178	401 aa	Known RBP	3.19	□□□□□ -1.9
TSR1	YDL060W	MRX4	Q12467	430 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	MHF2	Q3E829	80 aa		3.19	□□□□□ -1.9
TSR1	YDL060W	PPH21	P23594	369 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	STP22	P25604	385 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	AHC2	P25649	128 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	CDC50	P25656	391 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	3.18	□□□□□ -1.9	not detected
TSR1	YDL060W	HOM6	P31116	359 aa	Known RBP	3.18	□□□□□ -1.9
TSR1	YDL060W	GSP1	P32835	219 aa	Known RBP	3.18	□□□□□ -1.9
TSR1	YDL060W	GSP2	P32836	220 aa	Known RBP	3.18	□□□□□ -1.9
TSR1	YDL060W	MDM31	P38880	579 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	VAB2	P40003	282 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	SMB1	P40018	196 aa	Known RBP	3.18	□□□□□ -1.9
TSR1	YDL060W	FIS1	P40515	155 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	YIA6	P40556	373 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	YGR201C	P42936	225 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	SDT1	P53078	280 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	YNL184C	P53876	108 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	YPL067C	Q02754	198 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	UPS3	Q04006	179 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	YMR252C	Q04814	134 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	CTR3	Q06686	241 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	YLR012C	Q07927	99 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	GPM2	Q12008	311 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	QCR7	P00128	127 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	SGA1	P08019	549 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	TFS1	P14306	219 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	SNF6	P18888	332 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	RFA3	P26755	122 aa	Known RBP	3.18	□□□□□ -1.9
TSR1	YDL060W	MCH2	P36032	473 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	MRPS9	P38120	278 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	ARC40	P38328	384 aa	Known RBP	3.18	□□□□□ -1.9
TSR1	YDL060W	SHG1	P38337	142 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	COS8	P38723	381 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	MET30	P39014	640 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	SPO73	P40031	143 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	RRG9	P40156	214 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	DFG10	P40526	253 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	CAT5	P41735	233 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	TDA1	Q03533	586 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	TVP18	Q04767	167 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	YMR253C	Q04835	414 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	ANT1	Q06497	328 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	TAZ1	Q06510	381 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	PRM4	Q12498	284 aa		3.18	□□□□□ -1.9
TSR1	YDL060W	CDC28	P00546	298 aa	Known RBP	3.17	□□□□□ -1.9
TSR1	YDL060W	ERD2	P18414	219 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	FMP23	P38231	175 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	SHE3	P38272	425 aa	Known RBP	3.17	□□□□□ -1.9
TSR1	YDL060W	BDH1	P39714	382 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	COX15	P40086	486 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	YMR144W	P40214	342 aa	Known RBP	3.17	□□□□□ -1.9
TSR1	YDL060W	PGD1	P40356	397 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	NIF3	P53081	288 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	FMP41	P53889	259 aa	Known RBP	3.17	□□□□□ -1.9
TSR1	YDL060W	CYT2	Q00873	224 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	EST3	Q03096	181 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	GOT1	Q03554	138 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	YLR281C	Q05863	155 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	HRD1	Q08109	551 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	NAT5	Q08689	176 aa		3.17	□□□□□ -1.9
TSR1	YDL060W	UTP23	Q12339	254 aa	Known RBP	3.17	□□□□□ -1.9
TSR1	YDL060W	YCR024C-B	Q3E7Z8	88 aa		3.17	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 28.2 ms