RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 ARMC5Q96C12 935 aa21.6■■□□□ 1.05
CLN3-250ENST00000636839 ADAM2Q99965 735 aa21.6■■□□□ 1.05
CLN3-250ENST00000636839 CHST12Q9NRB3 414 aa21.6■■□□□ 1.05
CLN3-250ENST00000636839 CNTN3Q9P232 1028 aa21.6■■□□□ 1.05
CLN3-250ENST00000636839 DUSP10Q9Y6W6 482 aa21.6■■□□□ 1.05
CLN3-250ENST00000636839 WEE2P0C1S8 567 aa21.6■■□□□ 1.05
CLN3-250ENST00000636839 ZSCAN20P17040 1043 aaPredicted RBP21.6■■□□□ 1.05
CLN3-250ENST00000636839 SLC39A5Q6ZMH5 540 aa21.6■■□□□ 1.05
CLN3-250ENST00000636839 PALB2Q86YC2 1186 aa21.6■■□□□ 1.05
CLN3-250ENST00000636839 LNX1Q8TBB1 728 aaPredicted RBP21.6■■□□□ 1.05
CLN3-250ENST00000636839 SYT11Q9BT88 431 aa21.6■■□□□ 1.05
CLN3-250ENST00000636839 PCDHA13Q9Y5I0 950 aa21.6■■□□□ 1.05
CLN3-250ENST00000636839 DDX3XO00571 662 aaKnown RBP eCLIP21.59■■□□□ 1.053e-8■■■□□ 15.1
CLN3-250ENST00000636839 LCA5LO95447 670 aa21.59■■□□□ 1.05
CLN3-250ENST00000636839 SOX4Q06945 474 aaPredicted RBP21.59■■□□□ 1.05
CLN3-250ENST00000636839 NOP9Q86U38 636 aaKnown RBP21.59■■□□□ 1.05
CLN3-250ENST00000636839 RTN4RL1Q86UN2 441 aaPredicted RBP21.59■■□□□ 1.05
CLN3-250ENST00000636839 GLYCTKQ8IVS8 523 aa21.59■■□□□ 1.05
CLN3-250ENST00000636839 RNF169Q8NCN4 708 aa21.59■■□□□ 1.05
CLN3-250ENST00000636839 IMPG2Q9BZV3 1241 aa21.59■■□□□ 1.05
CLN3-250ENST00000636839 GOLGA2P5Q9HBQ8 144 aa21.59■■□□□ 1.05
CLN3-250ENST00000636839 CACNG4Q9UBN1 327 aa21.59■■□□□ 1.05
CLN3-250ENST00000636839 DAAM1Q9Y4D1 1078 aa21.59■■□□□ 1.05
CLN3-250ENST00000636839 RAP1GAPP47736 663 aa21.58■■□□□ 1.05
CLN3-250ENST00000636839 CTCFP49711 727 aaPredicted RBP21.58■■□□□ 1.05
CLN3-250ENST00000636839 SLC18A3Q16572 532 aa21.58■■□□□ 1.05
CLN3-250ENST00000636839 WDR72Q3MJ13 1102 aa21.58■■□□□ 1.05
CLN3-250ENST00000636839 TAF3Q5VWG9 929 aa21.58■■□□□ 1.05
CLN3-250ENST00000636839 LRRC8DQ7L1W4 858 aa21.58■■□□□ 1.05
CLN3-250ENST00000636839 CD302Q8IX05 232 aa21.58■■□□□ 1.05
CLN3-250ENST00000636839 PACSIN1Q9BY11 444 aa21.58■■□□□ 1.05
CLN3-250ENST00000636839 BZW2Q9Y6E2 419 aaKnown RBP21.58■■□□□ 1.05
CLN3-250ENST00000636839 PTGESO14684 152 aa21.58■■□□□ 1.04
CLN3-250ENST00000636839 NBNO60934 754 aa21.58■■□□□ 1.04
CLN3-250ENST00000636839 CAND2O75155 1236 aa21.58■■□□□ 1.04
CLN3-250ENST00000636839 OFD1O75665 1012 aa21.58■■□□□ 1.04
CLN3-250ENST00000636839 CD58P19256 250 aa21.58■■□□□ 1.04
CLN3-250ENST00000636839 ASPAP45381 313 aa21.58■■□□□ 1.04
CLN3-250ENST00000636839 CDH8P55286 799 aa21.58■■□□□ 1.04
CLN3-250ENST00000636839 SPA17Q15506 151 aa21.58■■□□□ 1.04
CLN3-250ENST00000636839 PTPN14Q15678 1187 aa21.58■■□□□ 1.04
CLN3-250ENST00000636839 TRIM60Q495X7 471 aa21.58■■□□□ 1.04
CLN3-250ENST00000636839 XKR4Q5GH76 650 aa21.58■■□□□ 1.04
CLN3-250ENST00000636839 GSTCDQ8NEC7 633 aa21.58■■□□□ 1.04
CLN3-250ENST00000636839 GAD1Q99259 594 aa21.58■■□□□ 1.04
CLN3-250ENST00000636839 MIOSQ9NXC5 875 aa21.58■■□□□ 1.04
CLN3-250ENST00000636839 SELPP16109 830 aa21.57■■□□□ 1.04
CLN3-250ENST00000636839 ATF7P17544 494 aaPredicted RBP21.57■■□□□ 1.04
CLN3-250ENST00000636839 CHRNB2P17787 502 aa21.57■■□□□ 1.04
CLN3-250ENST00000636839 IGFBP6P24592 240 aaPredicted RBP21.57■■□□□ 1.04
CLN3-250ENST00000636839 MLH1P40692 756 aa21.57■■□□□ 1.04
CLN3-250ENST00000636839 TMEM270Q6UE05 265 aa21.57■■□□□ 1.04
CLN3-250ENST00000636839 AGMOQ6ZNB7 445 aa21.57■■□□□ 1.04
CLN3-250ENST00000636839 KIAA1328Q86T90 577 aa21.57■■□□□ 1.04
CLN3-250ENST00000636839 EPS8L1Q8TE68 723 aa21.57■■□□□ 1.04
CLN3-250ENST00000636839 HPDLQ96IR7 371 aa21.57■■□□□ 1.04
CLN3-250ENST00000636839 IFIH1Q9BYX4 1025 aaKnown RBP21.57■■□□□ 1.04
CLN3-250ENST00000636839 NIF3L1Q9GZT8 377 aa21.57■■□□□ 1.04
CLN3-250ENST00000636839 SDCBP2Q9H190 292 aa21.57■■□□□ 1.04
CLN3-250ENST00000636839 NOCTQ9UK39 431 aaKnown RBP21.57■■□□□ 1.04
CLN3-250ENST00000636839 PCDHB4Q9Y5E5 795 aa21.57■■□□□ 1.04
CLN3-250ENST00000636839 KIAA0100Q14667 2235 aaKnown RBP21.57■■□□□ 1.04
CLN3-250ENST00000636839 FANCGO15287 622 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 ITGA4P13612 1032 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 TNNT1P13805 278 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 MAGEA1P43355 309 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 KRT83P78385 493 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 TLE2Q04725 743 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 ENOSF1Q7L5Y1 443 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 SLC30A5Q8TAD4 765 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 LINC01599Q8WXQ3 324 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 TAS2R14Q9NYV8 317 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 ITGA11Q9UKX5 1188 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 TMCO5BA8MYB1 307 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 CYP11B1P15538 503 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 SSTR3P32745 418 aaPredicted RBP21.56■■□□□ 1.04
CLN3-250ENST00000636839 RBP5P82980 135 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 FAAP100Q0VG06 881 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 DNTTIP2Q5QJE6 756 aaKnown RBP21.56■■□□□ 1.04
CLN3-250ENST00000636839 UBR7Q8N806 425 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 CAGE1Q8TC20 777 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 SCLYQ96I15 445 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 PCDHB18PQ96TA0 734 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 AGPAT1Q99943 283 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 SMYD3Q9H7B4 428 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 SEPT11Q9NVA2 429 aaKnown RBP21.56■■□□□ 1.04
CLN3-250ENST00000636839 NAGPAQ9UK23 515 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 DERAQ9Y315 318 aa21.56■■□□□ 1.04
CLN3-250ENST00000636839 CCP110O43303 1012 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 IPO7O95373 1038 aaKnown RBP21.55■■□□□ 1.04
CLN3-250ENST00000636839 MMEP08473 750 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 COL6A1P12109 1028 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 KCNE1P15382 129 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 GJA8P48165 433 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 TCTN1Q2MV58 587 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 ZNF394Q53GI3 561 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 NT5DC4Q86YG4 428 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 RPUSD2Q8IZ73 545 aaKnown RBP21.55■■□□□ 1.04
CLN3-250ENST00000636839 CISHQ9NSE2 258 aa21.55■■□□□ 1.04
CLN3-250ENST00000636839 GUCA1BQ9UMX6 200 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms