RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 MTF2Q9Y483 593 aaPredicted RBP10.47□□□□□ -0.73
VRK3-224ENST00000601849 HIP1RO75146 1068 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 HARSP12081 509 aaKnown RBP10.46□□□□□ -0.73
VRK3-224ENST00000601849 SCP2P22307 547 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 PAX3P23760 479 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 TARSP26639 723 aaKnown RBP10.46□□□□□ -0.73
VRK3-224ENST00000601849 GDI1P31150 447 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 ALDH1A3P47895 512 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 CCR3P51677 355 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 YWHAHQ04917 246 aaPredicted RBP10.46□□□□□ -0.73
VRK3-224ENST00000601849 MRPL58Q14197 206 aaKnown RBP10.46□□□□□ -0.73
VRK3-224ENST00000601849 ZRSR1Q15695 479 aaKnown RBP10.46□□□□□ -0.73
VRK3-224ENST00000601849 RSPO4Q2I0M5 234 aaPredicted RBP10.46□□□□□ -0.73
VRK3-224ENST00000601849 MAMSTRQ6ZN01 415 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 CELF5Q8N6W0 485 aaKnown RBP10.46□□□□□ -0.73
VRK3-224ENST00000601849 IGSF22Q8N9C0 903 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 ZBTB44Q8NCP5 570 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 FAM200AQ8TCP9 573 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 DDX12PQ92771 950 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 BICD1Q96G01 975 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 SUSD3Q96L08 255 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 NTPCRQ9BSD7 190 aaKnown RBP10.46□□□□□ -0.73
VRK3-224ENST00000601849 TARS2Q9BW92 718 aaKnown RBP10.46□□□□□ -0.73
VRK3-224ENST00000601849 EPC1Q9H2F5 836 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 LMAN1LQ9HAT1 526 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 PTPRHQ9HD43 1115 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 SH2B1Q9NRF2 756 aaPredicted RBP10.46□□□□□ -0.73
VRK3-224ENST00000601849 DLL3Q9NYJ7 618 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 CNTN3Q9P232 1028 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 LARSQ9P2J5 1176 aaKnown RBP10.46□□□□□ -0.73
VRK3-224ENST00000601849 FBXL5Q9UKA1 691 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 NDRG2Q9UN36 371 aaKnown RBP10.46□□□□□ -0.73
VRK3-224ENST00000601849 INSL5Q9Y5Q6 135 aa10.46□□□□□ -0.73
VRK3-224ENST00000601849 DMXL1Q9Y485 3027 aa10.46□□□□□ -0.74
VRK3-224ENST00000601849 E9PMD0 336 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 DPYSL4O14531 572 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 FGF19O95750 216 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 EDN1P05305 212 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 MYL4P12829 197 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 CEBPBP17676 345 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 ABCD1P33897 745 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 PRPHP41219 470 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 EPHB3P54753 998 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 MLLT6P55198 1093 aaPredicted RBP10.45□□□□□ -0.74
VRK3-224ENST00000601849 TWF1Q12792 350 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 LRRC32Q14392 662 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 GRM2Q14416 872 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 NOLC1Q14978 699 aaKnown RBP eCLIP10.45□□□□□ -0.74
VRK3-224ENST00000601849 ECM1Q16610 540 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 SLC5A9Q2M3M2 681 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 FAM78AQ5JUQ0 283 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 PRSS36Q5K4E3 855 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 RINT1Q6NUQ1 792 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 ARMCX5Q6P1M9 558 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 CD300LGQ6UXG3 332 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 ZPBP2Q6X784 338 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 DSTYKQ6XUX3 929 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 HAUS6Q7Z4H7 955 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 MFSD6LQ8IWD5 586 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 CEP120Q8N960 986 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 C3orf58Q8NDZ4 430 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 TBC1D32Q96NH3 1257 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 ASB16Q96NS5 453 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 TSPAN18Q96SJ8 248 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 PLA2G2FQ9BZM2 168 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 ZNF334Q9HCZ1 680 aaPredicted RBP10.45□□□□□ -0.74
VRK3-224ENST00000601849 KCND2Q9NZV8 630 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 ARHGAP28Q9P2N2 729 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 ANKFY1Q9P2R3 1169 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 CDV3Q9UKY7 258 aaKnown RBP10.45□□□□□ -0.74
VRK3-224ENST00000601849 USP18Q9UMW8 372 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 PCDHB8Q9UN66 801 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 SMG5Q9UPR3 1016 aaKnown RBP10.45□□□□□ -0.74
VRK3-224ENST00000601849 DOCK8Q8NF50 2099 aa10.45□□□□□ -0.74
VRK3-224ENST00000601849 OR6C75A6NL08 312 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 SLC16A4O15374 487 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 FOXD2O60548 495 aaPredicted RBP10.44□□□□□ -0.74
VRK3-224ENST00000601849 LILRB5O75023 590 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 SEC24AO95486 1093 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 CLTAP09496 248 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 PLS3P13797 630 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 PROZP22891 400 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 GUCY2CP25092 1073 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 U2AF2P26368 475 aaKnown RBP eCLIP10.44□□□□□ -0.74
VRK3-224ENST00000601849 CNR2P34972 360 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 CXCL12P48061 93 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 KPNA1P52294 538 aaPredicted RBP10.44□□□□□ -0.74
VRK3-224ENST00000601849 SOX4Q06945 474 aaPredicted RBP10.44□□□□□ -0.74
VRK3-224ENST00000601849 MTAPQ13126 283 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 PTPAQ15257 358 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 TSSK4Q6SA08 328 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 C1orf186Q6ZWK4 172 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 C4orf32Q8N8J7 132 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 ZSCAN18Q8TBC5 510 aaPredicted RBP10.44□□□□□ -0.74
VRK3-224ENST00000601849 SPIRE2Q8WWL2 714 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 ZMAT2Q96NC0 199 aaKnown RBP10.44□□□□□ -0.74
VRK3-224ENST00000601849 C8orf33Q9H7E9 229 aaPredicted RBP10.44□□□□□ -0.74
VRK3-224ENST00000601849 TRPV4Q9HBA0 871 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 PPP4R2Q9NY27 417 aa10.44□□□□□ -0.74
VRK3-224ENST00000601849 UBQLN1Q9UMX0 589 aaKnown RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms