RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 SQORQ9Y6N5 450 aa8.57□□□□□ -1.04
VPS39-213ENST00000570062 ABLIM1O14639 778 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 GPR182O15218 404 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 FAM189A1O60320 539 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 TSPAN1O60635 241 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 AOC2O75106 756 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 GPR32O75388 356 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 TRPA1O75762 1119 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 TBC1D8O95759 1140 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 AVPP01185 164 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 HLA-DRAP01903 254 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 VTNP04004 478 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 TUBBP07437 444 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 STAG3L1P0CL83 205 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 HSPA8P11142 646 aaKnown RBP8.56□□□□□ -1.04
VPS39-213ENST00000570062 SKIP12755 728 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 ATF7P17544 494 aaPredicted RBP8.56□□□□□ -1.04
VPS39-213ENST00000570062 GTF2F1P35269 517 aaKnown RBP eCLIP8.56□□□□□ -1.04
VPS39-213ENST00000570062 PDE6CP51160 858 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 ARID5AQ03989 594 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 CACNB2Q08289 660 aaPredicted RBP8.56□□□□□ -1.04
VPS39-213ENST00000570062 CLUL1Q15846 466 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 AMHR2Q16671 573 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 ARHGAP44Q17R89 818 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 ZNF569Q5MCW4 686 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 MAP3K21Q5TCX8 1036 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 BRICD5Q6PL45 260 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 TRAPPC11Q7Z392 1133 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 ZBTB33Q86T24 672 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 RHOT2Q8IXI1 618 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 CEP112Q8N8E3 955 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 ACRBPQ8NEB7 543 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 MNS1Q8NEH6 495 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 KLHDC9Q8NEP7 349 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 MYRIPQ8NFW9 859 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 HELQQ8TDG4 1101 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 TAS1R2Q8TE23 839 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 ZBTB45Q96K62 511 aaPredicted RBP8.56□□□□□ -1.04
VPS39-213ENST00000570062 RPGRIP1Q96KN7 1286 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 PHOX2BQ99453 314 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 AGPAT1Q99943 283 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 CELF4Q9BZC1 486 aaKnown RBP8.56□□□□□ -1.04
VPS39-213ENST00000570062 TRIM6Q9C030 488 aaPredicted RBP8.56□□□□□ -1.04
VPS39-213ENST00000570062 CDT1Q9H211 546 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 VRTNQ9H8Y1 702 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 L2HGDHQ9H9P8 463 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 CYP3A43Q9HB55 503 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 PDE11AQ9HCR9 933 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 HMX1Q9NP08 348 aaPredicted RBP8.56□□□□□ -1.04
VPS39-213ENST00000570062 PRDM9Q9NQV7 894 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 DDX20Q9UHI6 824 aaKnown RBP8.56□□□□□ -1.04
VPS39-213ENST00000570062 NAGPAQ9UK23 515 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 ITGA11Q9UKX5 1188 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 KIAA1257Q9ULG3 409 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 GABRQQ9UN88 632 aa8.56□□□□□ -1.04
VPS39-213ENST00000570062 MROH7Q68CQ1 1323 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 ANKRD62A6NC57 917 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 FOXN3O00409 490 aaPredicted RBP8.55□□□□□ -1.04
VPS39-213ENST00000570062 AXIN1O15169 862 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 ADCY6O43306 1168 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 ADAMTS4O75173 837 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 URI1O94763 535 aaPredicted RBP8.55□□□□□ -1.04
VPS39-213ENST00000570062 SLU7O95391 586 aaKnown RBP8.55□□□□□ -1.04
VPS39-213ENST00000570062 ASS1P00966 412 aaKnown RBP8.55□□□□□ -1.04
VPS39-213ENST00000570062 CD4P01730 458 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 FAM163BP0C2L3 166 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 TMEM253P0C7T8 217 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 MYBL1P10243 752 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 ARF4P18085 180 aaPredicted RBP8.55□□□□□ -1.04
VPS39-213ENST00000570062 CTGFP29279 349 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 ARHGAP25P42331 645 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 RBP5P82980 135 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 GFPT1Q06210 699 aaPredicted RBP8.55□□□□□ -1.04
VPS39-213ENST00000570062 MYO1EQ12965 1108 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 PTK7Q13308 1070 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 CUL2Q13617 745 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 TCEAL1Q15170 157 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 PRPF38BQ5VTL8 546 aaKnown RBP8.55□□□□□ -1.04
VPS39-213ENST00000570062 TREML4Q6UXN2 200 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 ZNF571Q7Z3V5 609 aaPredicted RBP8.55□□□□□ -1.04
VPS39-213ENST00000570062 THNSL1Q8IYQ7 743 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 SLC30A5Q8TAD4 765 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 PLEKHO2Q8TD55 490 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 DNAJB3Q8WWF6 145 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 CTNNBL1Q8WYA6 563 aaPredicted RBP8.55□□□□□ -1.04
VPS39-213ENST00000570062 VCPIP1Q96JH7 1222 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 GLT1D1Q96MS3 346 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 ZIC5Q96T25 663 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 PDZD7Q9H5P4 517 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 UBN1Q9NPG3 1134 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 HDAC6Q9UBN7 1215 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 GUCA1BQ9UMX6 200 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 CNTN6Q9UQ52 1028 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 TRPV2Q9Y5S1 764 aa8.55□□□□□ -1.04
VPS39-213ENST00000570062 A0A087X0T9 212 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 DYNC1I1O14576 645 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 MED7O43513 233 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 RTN2O75298 545 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 ASGR1P07306 291 aa8.54□□□□□ -1.04
VPS39-213ENST00000570062 FAM228BP0C875 321 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms