RNA–Protein interactions for RNA: ENST00000563952.1

CMTM4-204, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene CMTM4, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-204ENST00000563952 SYN3O14994 580 aa33.37■■■□□ 2.93
CMTM4-204ENST00000563952 SPATA1Q5VX52 437 aa33.37■■■□□ 2.93
CMTM4-204ENST00000563952 CRELD2Q6UXH1 353 aaPredicted RBP33.37■■■□□ 2.93
CMTM4-204ENST00000563952 GRAMD1CQ8IYS0 662 aa33.37■■■□□ 2.93
CMTM4-204ENST00000563952 SMG7Q92540 1137 aaKnown RBP33.37■■■□□ 2.93
CMTM4-204ENST00000563952 FAM213AQ9BRX8 229 aa33.37■■■□□ 2.93
CMTM4-204ENST00000563952 DENND4AQ7Z401 1863 aa33.37■■■□□ 2.93
CMTM4-204ENST00000563952 TCHHQ07283 1943 aa33.36■■■□□ 2.93
CMTM4-204ENST00000563952 A0A1B0GVL5 298 aa33.36■■■□□ 2.93
CMTM4-204ENST00000563952 PFKFB1P16118 471 aa33.36■■■□□ 2.93
CMTM4-204ENST00000563952 RAB33AQ14088 237 aa33.36■■■□□ 2.93
CMTM4-204ENST00000563952 TMEM31Q5JXX7 168 aa33.36■■■□□ 2.93
CMTM4-204ENST00000563952 LIN9Q5TKA1 542 aa33.36■■■□□ 2.93
CMTM4-204ENST00000563952 CCDC149Q6ZUS6 474 aa33.36■■■□□ 2.93
CMTM4-204ENST00000563952 TDRD5Q8NAT2 981 aaKnown RBP33.36■■■□□ 2.93
CMTM4-204ENST00000563952 NOC3LQ8WTT2 800 aaKnown RBP33.36■■■□□ 2.93
CMTM4-204ENST00000563952 ASB7Q9H672 318 aa33.36■■■□□ 2.93
CMTM4-204ENST00000563952 PIDD1Q9HB75 910 aa33.36■■■□□ 2.93
CMTM4-204ENST00000563952 ZDHHC7Q9NXF8 308 aa33.36■■■□□ 2.93
CMTM4-204ENST00000563952 DERAQ9Y315 318 aa33.36■■■□□ 2.93
CMTM4-204ENST00000563952 ZMYND10O75800 440 aa33.35■■■□□ 2.93
CMTM4-204ENST00000563952 CMA1P23946 247 aa33.35■■■□□ 2.93
CMTM4-204ENST00000563952 FAM26FQ5R3K3 315 aa33.35■■■□□ 2.93
CMTM4-204ENST00000563952 UNC13DQ70J99 1090 aa33.35■■■□□ 2.93
CMTM4-204ENST00000563952 ZSWIM2Q8NEG5 633 aa33.35■■■□□ 2.93
CMTM4-204ENST00000563952 ZNF707Q96C28 371 aaPredicted RBP33.35■■■□□ 2.93
CMTM4-204ENST00000563952 CBWD1Q9BRT8 395 aa33.35■■■□□ 2.93
CMTM4-204ENST00000563952 C11orf16Q9NQ32 467 aa33.35■■■□□ 2.93
CMTM4-204ENST00000563952 H7C4K7 107 aa33.34■■■□□ 2.93
CMTM4-204ENST00000563952 SLFN14P0C7P3 912 aa33.34■■■□□ 2.93
CMTM4-204ENST00000563952 GARTP22102 1010 aa33.34■■■□□ 2.93
CMTM4-204ENST00000563952 CUL4BQ13620 913 aa33.34■■■□□ 2.93
CMTM4-204ENST00000563952 CYP26C1Q6V0L0 522 aa33.34■■■□□ 2.93
CMTM4-204ENST00000563952 APPL2Q8NEU8 664 aa33.34■■■□□ 2.93
CMTM4-204ENST00000563952 PRKD2Q9BZL6 878 aa33.34■■■□□ 2.93
CMTM4-204ENST00000563952 SCAND2PQ9GZW5 306 aaPredicted RBP33.34■■■□□ 2.93
CMTM4-204ENST00000563952 PCIF1Q9H4Z3 704 aa33.34■■■□□ 2.93
CMTM4-204ENST00000563952 PCDHB8Q9UN66 801 aa33.34■■■□□ 2.93
CMTM4-204ENST00000563952 GOLGA8IPA6NC78 632 aa33.33■■■□□ 2.93
CMTM4-204ENST00000563952 GOLGA8JA6NMD2 632 aa33.33■■■□□ 2.93
CMTM4-204ENST00000563952 PPEF2O14830 753 aa33.33■■■□□ 2.93
CMTM4-204ENST00000563952 ACTN4O43707 911 aaKnown RBP33.33■■■□□ 2.93
CMTM4-204ENST00000563952 C8AP07357 584 aa33.33■■■□□ 2.93
CMTM4-204ENST00000563952 ARPP19P56211 112 aa33.33■■■□□ 2.93
CMTM4-204ENST00000563952 ARMCX5Q6P1M9 558 aa33.33■■■□□ 2.93
CMTM4-204ENST00000563952 C2CD2Q9Y426 696 aa33.33■■■□□ 2.93
CMTM4-204ENST00000563952 GPR37L1O60883 481 aa33.32■■■□□ 2.92
CMTM4-204ENST00000563952 IL18RAPO95256 599 aa33.32■■■□□ 2.92
CMTM4-204ENST00000563952 LDHAP00338 332 aaKnown RBP33.32■■■□□ 2.92
CMTM4-204ENST00000563952 POU5F1Q01860 360 aaKnown RBP33.32■■■□□ 2.92
CMTM4-204ENST00000563952 CTXN3Q4LDR2 81 aa33.32■■■□□ 2.92
CMTM4-204ENST00000563952 PPM1LQ5SGD2 360 aa33.32■■■□□ 2.92
CMTM4-204ENST00000563952 DSTYKQ6XUX3 929 aa33.32■■■□□ 2.92
CMTM4-204ENST00000563952 SLC7A14Q8TBB6 771 aa33.32■■■□□ 2.92
CMTM4-204ENST00000563952 EIF3DO15371 548 aaKnown RBP eCLIP33.31■■■□□ 2.92
CMTM4-204ENST00000563952 C9orf57Q5W0N0 161 aa33.31■■■□□ 2.92
CMTM4-204ENST00000563952 PAGE5Q96GU1 130 aa33.31■■■□□ 2.92
CMTM4-204ENST00000563952 LRFN3Q9BTN0 628 aa33.31■■■□□ 2.92
CMTM4-204ENST00000563952 RHOBTB2Q9BYZ6 727 aa33.31■■■□□ 2.92
CMTM4-204ENST00000563952 WDR6Q9NNW5 1121 aaKnown RBP33.31■■■□□ 2.92
CMTM4-204ENST00000563952 RBAKQ9NYW8 714 aaPredicted RBP33.31■■■□□ 2.92
CMTM4-204ENST00000563952 FBXL5Q9UKA1 691 aa33.31■■■□□ 2.92
CMTM4-204ENST00000563952 USTQ9Y2C2 406 aa33.31■■■□□ 2.92
CMTM4-204ENST00000563952 TIMM13Q9Y5L4 95 aaPredicted RBP33.31■■■□□ 2.92
CMTM4-204ENST00000563952 CLUHO75153 1309 aa33.3■■■□□ 2.92
CMTM4-204ENST00000563952 M0QZQ0 153 aa33.3■■■□□ 2.92
CMTM4-204ENST00000563952 EXTL3O43909 919 aa33.3■■■□□ 2.92
CMTM4-204ENST00000563952 HOXD13P35453 343 aa33.3■■■□□ 2.92
CMTM4-204ENST00000563952 ROR1Q01973 937 aa33.3■■■□□ 2.92
CMTM4-204ENST00000563952 MRPL58Q14197 206 aaKnown RBP33.3■■■□□ 2.92
CMTM4-204ENST00000563952 SLC8B1Q6J4K2 584 aa33.3■■■□□ 2.92
CMTM4-204ENST00000563952 ZNF280DQ6N043 979 aa33.3■■■□□ 2.92
CMTM4-204ENST00000563952 EPM2AIP1Q7L775 607 aaPredicted RBP33.3■■■□□ 2.92
CMTM4-204ENST00000563952 OTOP3Q7RTS5 596 aa33.3■■■□□ 2.92
CMTM4-204ENST00000563952 BRSK2Q8IWQ3 736 aa33.3■■■□□ 2.92
CMTM4-204ENST00000563952 EFCAB13Q8IY85 973 aa33.3■■■□□ 2.92
CMTM4-204ENST00000563952 ACSF2Q96CM8 615 aaPredicted RBP33.3■■■□□ 2.92
CMTM4-204ENST00000563952 GDPD2Q9HCC8 539 aa33.3■■■□□ 2.92
CMTM4-204ENST00000563952 DPP3Q9NY33 737 aa33.3■■■□□ 2.92
CMTM4-204ENST00000563952 HPSEQ9Y251 543 aa33.3■■■□□ 2.92
CMTM4-204ENST00000563952 PVALEFA0A1B0GWK0 134 aa33.29■■■□□ 2.92
CMTM4-204ENST00000563952 TBC1D4O60343 1298 aa33.29■■■□□ 2.92
CMTM4-204ENST00000563952 PAPLNO95428 1278 aa33.29■■■□□ 2.92
CMTM4-204ENST00000563952 AARSP49588 968 aaKnown RBP eCLIP33.29■■■□□ 2.92
CMTM4-204ENST00000563952 WNT7BP56706 349 aa33.29■■■□□ 2.92
CMTM4-204ENST00000563952 EHHADHQ08426 723 aa33.29■■■□□ 2.92
CMTM4-204ENST00000563952 ZNF507Q8TCN5 953 aa33.29■■■□□ 2.92
CMTM4-204ENST00000563952 EDAQ92838 391 aa33.29■■■□□ 2.92
CMTM4-204ENST00000563952 LIMD1Q9UGP4 676 aa33.29■■■□□ 2.92
CMTM4-204ENST00000563952 USP25Q9UHP3 1055 aa33.29■■■□□ 2.92
CMTM4-204ENST00000563952 CCL16O15467 120 aa33.28■■■□□ 2.92
CMTM4-204ENST00000563952 HNRNPA1P09651 372 aaKnown RBP eCLIP33.28■■■□□ 2.92
CMTM4-204ENST00000563952 LILRA4P59901 499 aa33.28■■■□□ 2.92
CMTM4-204ENST00000563952 PTPN21Q16825 1174 aa33.28■■■□□ 2.92
CMTM4-204ENST00000563952 NELFCDQ8IXH7 590 aa33.28■■■□□ 2.92
CMTM4-204ENST00000563952 ZDHHC14Q8IZN3 488 aa33.28■■■□□ 2.92
CMTM4-204ENST00000563952 GPD1LQ8N335 351 aa33.28■■■□□ 2.92
CMTM4-204ENST00000563952 PLCD3Q8N3E9 789 aa33.28■■■□□ 2.92
CMTM4-204ENST00000563952 SLC39A2Q9NP94 309 aa33.28■■■□□ 2.92
CMTM4-204ENST00000563952 POLIQ9UNA4 740 aa33.28■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms