RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 NAF1Q96HR8 494 aaKnown RBP13.1□□□□□ -0.31
LDLR-205ENST00000557933 DCLK3Q9C098 648 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 COL20A1Q9P218 1284 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 PI4KBQ9UBF8 816 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 DNPEPQ9ULA0 475 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 ZNF148Q9UQR1 794 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 DIS3Q9Y2L1 958 aaKnown RBP13.1□□□□□ -0.31
LDLR-205ENST00000557933 MROH7Q68CQ1 1323 aa13.1□□□□□ -0.31
LDLR-205ENST00000557933 NFIBO00712 420 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 TBX3O15119 743 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 POLR2MP0CAP2 368 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 PLS3P13797 630 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 CCND1P24385 295 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 MAGEA4P43358 317 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 MTMR2Q13614 643 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 PLEKHG4Q58EX7 1191 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 MFSD5Q6N075 450 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 TRMT10CQ7L0Y3 403 aaKnown RBP13.09□□□□□ -0.31
LDLR-205ENST00000557933 ASRGL1Q7L266 308 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 FAM71AQ8IYT1 594 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 FBF1Q8TES7 1133 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 DCAF4Q8WV16 495 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 IFT74Q96LB3 600 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 SERPINB12Q96P63 405 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 FAM213AQ9BRX8 229 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 TMX4Q9H1E5 349 aaPredicted RBP13.09□□□□□ -0.31
LDLR-205ENST00000557933 FBXO6Q9NRD1 293 aaPredicted RBP13.09□□□□□ -0.31
LDLR-205ENST00000557933 CFAP69A5D8W1 941 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 ZBED4O75132 1171 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 GAS8O95995 478 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 LINGO3P0C6S8 592 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 ADRA1DP25100 572 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 SSTR1P30872 391 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 RPL7AP62424 266 aaKnown RBP13.09□□□□□ -0.31
LDLR-205ENST00000557933 BIRC2Q13490 618 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 MTFR1Q15390 333 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 PPP2R5EQ16537 467 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 SMTNL2Q2TAL5 461 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 RHBDF2Q6PJF5 856 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 BTNL9Q6UXG8 535 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 TMEM130Q8N3G9 435 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 MKNK1Q9BUB5 465 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 TRABDQ9H4I3 376 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 KIAA1586Q9HCI6 787 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 KCNH7Q9NS40 1196 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 ARMCX1Q9P291 453 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 LARSQ9P2J5 1176 aaKnown RBP13.09□□□□□ -0.31
LDLR-205ENST00000557933 SMNDC1O75940 238 aaKnown RBP eCLIP13.09□□□□□ -0.31
LDLR-205ENST00000557933 FDX1P10109 184 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 PECAM1P16284 738 aaPredicted RBP13.09□□□□□ -0.31
LDLR-205ENST00000557933 ANXA13P27216 316 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 GPS1Q13098 491 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 CRELD2Q6UXH1 353 aaPredicted RBP13.09□□□□□ -0.31
LDLR-205ENST00000557933 DSTYKQ6XUX3 929 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 ARHGEF18Q6ZSZ5 1173 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 TTC7BQ86TV6 843 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 FMNL3Q8IVF7 1028 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 RPS6KC1Q96S38 1066 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 TMEM121Q9BTD3 319 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 DENND2DQ9H6A0 471 aaPredicted RBP13.09□□□□□ -0.31
LDLR-205ENST00000557933 CCDC134Q9H6E4 229 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 LRRC19Q9H756 370 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.09□□□□□ -0.314e-7■■□□□ 11.6
LDLR-205ENST00000557933 PRKAG3Q9UGI9 489 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 GTF3C4Q9UKN8 822 aa13.09□□□□□ -0.31
LDLR-205ENST00000557933 FAM47DPA6NHR8 397 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 PEX11AO75192 247 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 FOSP01100 380 aaPredicted RBP13.08□□□□□ -0.32
LDLR-205ENST00000557933 T-ENOLP0DO92 83 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 CTCFP49711 727 aaPredicted RBP13.08□□□□□ -0.32
LDLR-205ENST00000557933 ACOT2P49753 483 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 SETDB1Q15047 1291 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 XKR9Q5GH70 373 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 STXBP4Q6ZWJ1 553 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 SV2AQ7L0J3 742 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 CYFIP1Q7L576 1253 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 RFWD2Q8NHY2 731 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 HELQQ8TDG4 1101 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 DDX50Q9BQ39 737 aaKnown RBP13.08□□□□□ -0.32
LDLR-205ENST00000557933 ATP9AO75110 1047 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 CDH16O75309 829 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 MAP3K6O95382 1288 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 KRT4P19013 534 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 DSG3P32926 999 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 STRN3Q13033 797 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 RIPK1Q13546 671 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 KCNT1Q5JUK3 1230 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 RNF220Q5VTB9 566 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 LVRNQ6Q4G3 990 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 ZNF483Q8TF39 744 aaPredicted RBP13.08□□□□□ -0.32
LDLR-205ENST00000557933 BICD1Q96G01 975 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 PRMT6Q96LA8 375 aaPredicted RBP13.08□□□□□ -0.32
LDLR-205ENST00000557933 TEKT3Q9BXF9 490 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 MAK16Q9BXY0 300 aaKnown RBP13.08□□□□□ -0.32
LDLR-205ENST00000557933 NYAP2Q9P242 653 aa13.08□□□□□ -0.32
LDLR-205ENST00000557933 DENND3A2RUS2 1198 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 FSCN2O14926 492 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 NEFHP12036 1026 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 KCNA3P22001 575 aa13.07□□□□□ -0.32
LDLR-205ENST00000557933 GCAP28676 217 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms