RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 TTC12Q9H892 705 aaPredicted RBP9□□□□□ -0.97
CCDC88C-214ENST00000557507 RBM12Q9NTZ6 932 aaKnown RBP9□□□□□ -0.97
CCDC88C-214ENST00000557507 PCNX2A6NKB5 2137 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 ACKR2O00590 384 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 SPATA31C1P0DKV0 1188 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 ATF2P15336 505 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 CCNE1P24864 410 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 PMLP29590 882 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 CXCL12P48061 93 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 SOX9P48436 509 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 ARPP19P56211 112 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 PTGDRQ13258 359 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 PPP2R5DQ14738 602 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 MAPK6Q16659 721 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 DCAF4L1Q3SXM0 396 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 HEATR6Q6AI08 1181 aaKnown RBP8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 CPLX2Q6PUV4 134 aaKnown RBP8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 PDZD4Q76G19 769 aaPredicted RBP8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 TCEAL8Q8IYN2 117 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 SPEM1Q8N4L4 309 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 FAM160A2Q8N612 972 aaPredicted RBP8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 CEP120Q8N960 986 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 MCPH1Q8NEM0 835 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 ZSCAN18Q8TBC5 510 aaPredicted RBP8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 DEPDC1BQ8WUY9 529 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 SMARCD2Q92925 531 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 UROC1Q96N76 676 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 IPO9Q96P70 1041 aaKnown RBP8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 ADPGKQ9BRR6 497 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 C2orf40Q9H1Z8 148 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 CYP4F11Q9HBI6 524 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 TRPV5Q9NQA5 729 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 CEP72Q9P209 647 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 ANGPTL2Q9UKU9 493 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 PCDHA12Q9UN75 941 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 MYO18AQ92614 2054 aaKnown RBP8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 ZZEF1O43149 2961 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 AKAP13Q12802 2813 aa8.99□□□□□ -0.97
CCDC88C-214ENST00000557507 ANKRD11Q6UB99 2663 aaPredicted RBP8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 ADAMTS9Q9P2N4 1935 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 SMIM28A0A1B0GU29 152 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 SLC38A8A6NNN8 435 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 ZNF197O14709 1029 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 NEMFO60524 1076 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 MED24O75448 989 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 MICAL2O94851 1124 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 PAPSS2O95340 614 aaPredicted RBP8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 CTDNEP1O95476 244 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 MYL4P12829 197 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 ATP2B1P20020 1258 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 ELF1P32519 619 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 TXKP42681 527 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 NAMPTP43490 491 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 BECN1Q14457 450 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 SF3A2Q15428 464 aaKnown RBP8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 TEAD2Q15562 447 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 CCDC6Q16204 474 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 N4BP2L1Q5TBK1 243 aaPredicted RBP8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 NT5DC1Q5TFE4 455 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 TXNDC11Q6PKC3 985 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 LONP2Q86WA8 852 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 DEPTORQ8TB45 409 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 SHKBP1Q8TBC3 707 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 MTMR9Q96QG7 549 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 TMEM60Q9H2L4 133 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 RXFP3Q9NSD7 469 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 FBXL5Q9UKA1 691 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 CYP46A1Q9Y6A2 500 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 MYOFQ9NZM1 2061 aa8.98□□□□□ -0.97
CCDC88C-214ENST00000557507 HEPACAM2A8MVW5 462 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 PODXLO00592 558 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 ZNF263O14978 683 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 MEFVO15553 781 aaPredicted RBP8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 TRAPPC3O43617 180 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 CDKL5O76039 1030 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 VNN2O95498 520 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 XRCC6P12956 609 aaKnown RBP eCLIP8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 XBP1P17861 261 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 KRT2P35908 639 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 EPHA5P54756 1037 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 TWF1Q12792 350 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 MRPL58Q14197 206 aaKnown RBP8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 C8orf34Q49A92 452 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 AASDHQ4L235 1098 aaPredicted RBP8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 CTXN3Q4LDR2 81 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 STXBP5Q5T5C0 1151 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 CYP4A22Q5TCH4 519 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 ATF7IP2Q5U623 682 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 PADI6Q6TGC4 694 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 CATSPER3Q86XQ3 398 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 MFSD6LQ8IWD5 586 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 TMEM130Q8N3G9 435 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 ZMAT2Q96NC0 199 aaKnown RBP8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 CDT1Q9H211 546 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 TRPV4Q9HBA0 871 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 POLD4Q9HCU8 107 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 TUFT1Q9NNX1 390 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 ASAH2Q9NR71 780 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 YIPF1Q9Y548 306 aa8.97□□□□□ -0.97
CCDC88C-214ENST00000557507 SPEGQ15772 3267 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms