RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 RAB24Q969Q5 203 aa6.75□□□□□ -1.33
PRPF39-209ENST00000556353 PCDHA13Q9Y5I0 950 aa6.75□□□□□ -1.33
PRPF39-209ENST00000556353 XPOTO43592 962 aaKnown RBP6.74□□□□□ -1.33
PRPF39-209ENST00000556353 MTHFD1P11586 935 aaKnown RBP6.74□□□□□ -1.33
PRPF39-209ENST00000556353 C5AR1P21730 350 aa6.74□□□□□ -1.33
PRPF39-209ENST00000556353 GUCY2FP51841 1108 aa6.74□□□□□ -1.33
PRPF39-209ENST00000556353 TARDBPQ13148 414 aaKnown RBP eCLIP6.74□□□□□ -1.33
PRPF39-209ENST00000556353 SIMC1Q8NDZ2 872 aa6.74□□□□□ -1.33
PRPF39-209ENST00000556353 CAGE1Q8TC20 777 aa6.74□□□□□ -1.33
PRPF39-209ENST00000556353 PTCD3Q96EY7 689 aaKnown RBP6.74□□□□□ -1.33
PRPF39-209ENST00000556353 BBC3Q96PG8 261 aaPredicted RBP6.74□□□□□ -1.33
PRPF39-209ENST00000556353 UNKLQ9H9P5 680 aaKnown RBP6.74□□□□□ -1.33
PRPF39-209ENST00000556353 HSFX1Q9UBD0 423 aa6.74□□□□□ -1.33
PRPF39-209ENST00000556353 TRHDEQ9UKU6 1024 aa6.74□□□□□ -1.33
PRPF39-209ENST00000556353 DMTF1Q9Y222 760 aa6.74□□□□□ -1.33
PRPF39-209ENST00000556353 MRFAP1Q9Y605 127 aa6.74□□□□□ -1.33
PRPF39-209ENST00000556353 ERCC6Q03468 1493 aa6.73□□□□□ -1.33
PRPF39-209ENST00000556353 GRM6O15303 877 aa6.73□□□□□ -1.33
PRPF39-209ENST00000556353 SGTAO43765 313 aa6.73□□□□□ -1.33
PRPF39-209ENST00000556353 FBLP22087 321 aaKnown RBP6.73□□□□□ -1.33
PRPF39-209ENST00000556353 ITKQ08881 620 aa6.73□□□□□ -1.33
PRPF39-209ENST00000556353 SLFN5Q08AF3 891 aa6.73□□□□□ -1.33
PRPF39-209ENST00000556353 ABCB5Q2M3G0 1257 aa6.73□□□□□ -1.33
PRPF39-209ENST00000556353 PABPC1LQ4VXU2 614 aaKnown RBP6.73□□□□□ -1.33
PRPF39-209ENST00000556353 KRTAP5-3Q6L8H2 238 aa6.73□□□□□ -1.33
PRPF39-209ENST00000556353 RD3Q7Z3Z2 195 aa6.73□□□□□ -1.33
PRPF39-209ENST00000556353 DCBLD1Q8N8Z6 715 aa6.73□□□□□ -1.33
PRPF39-209ENST00000556353 ZNF764Q96H86 408 aaPredicted RBP6.73□□□□□ -1.33
PRPF39-209ENST00000556353 AIFM2Q9BRQ8 373 aa6.73□□□□□ -1.33
PRPF39-209ENST00000556353 LRIT1Q9P2V4 623 aa6.73□□□□□ -1.33
PRPF39-209ENST00000556353 SBNO2Q9Y2G9 1366 aa6.72□□□□□ -1.33
PRPF39-209ENST00000556353 SHTN1A0MZ66 631 aa6.72□□□□□ -1.33
PRPF39-209ENST00000556353 FCER1AP12319 257 aa6.72□□□□□ -1.33
PRPF39-209ENST00000556353 CDK11BP21127 795 aaKnown RBP6.72□□□□□ -1.33
PRPF39-209ENST00000556353 MTMR1Q13613 665 aa6.72□□□□□ -1.33
PRPF39-209ENST00000556353 GEN1Q17RS7 908 aa6.72□□□□□ -1.33
PRPF39-209ENST00000556353 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.72□□□□□ -1.33
PRPF39-209ENST00000556353 IFI44Q8TCB0 444 aa6.72□□□□□ -1.33
PRPF39-209ENST00000556353 MTMR8Q96EF0 704 aa6.72□□□□□ -1.33
PRPF39-209ENST00000556353 TLK1Q9UKI8 766 aa6.72□□□□□ -1.33
PRPF39-209ENST00000556353 IPPQ9Y573 584 aa6.72□□□□□ -1.33
PRPF39-209ENST00000556353 LAMC3Q9Y6N6 1575 aa6.72□□□□□ -1.33
PRPF39-209ENST00000556353 SALL3Q9BXA9 1300 aa6.72□□□□□ -1.33
PRPF39-209ENST00000556353 TRGV11A0A075B6L2 103 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 HTRA2O43464 458 aaPredicted RBP6.71□□□□□ -1.34
PRPF39-209ENST00000556353 PCDHGA12O60330 932 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 ZFPL1O95159 310 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 SLC6A4P31645 630 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 KRT85P78386 507 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 MRPS35P82673 323 aaKnown RBP6.71□□□□□ -1.34
PRPF39-209ENST00000556353 ZNF169Q14929 603 aaPredicted RBP6.71□□□□□ -1.34
PRPF39-209ENST00000556353 RAB39AQ14964 217 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 PPP4R3AQ6IN85 833 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 FBXO42Q6P3S6 717 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 GADL1Q6ZQY3 521 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 DUSP26Q9BV47 211 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 PACSIN1Q9BY11 444 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 R3HDMLQ9H3Y0 253 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 RSAD1Q9HA92 442 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 KCTD5Q9NXV2 234 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 LIMCH1Q9UPQ0 1083 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 PCDHGA9Q9Y5G4 932 aaKnown RBP6.71□□□□□ -1.34
PRPF39-209ENST00000556353 PCDHGA8Q9Y5G5 932 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 PCDHGA7Q9Y5G6 932 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 PCDHGA6Q9Y5G7 932 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 PCDHGA3Q9Y5H0 932 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 COX11Q9Y6N1 276 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 SPATA31A6Q5VVP1 1343 aa6.71□□□□□ -1.34
PRPF39-209ENST00000556353 COL11A2P13942 1736 aaPredicted RBP6.7□□□□□ -1.34
PRPF39-209ENST00000556353 CCDC154A6NI56 674 aa6.7□□□□□ -1.34
PRPF39-209ENST00000556353 IGSF3O75054 1194 aa6.7□□□□□ -1.34
PRPF39-209ENST00000556353 AGFG2O95081 481 aa6.7□□□□□ -1.34
PRPF39-209ENST00000556353 SBK3P0C264 359 aa6.7□□□□□ -1.34
PRPF39-209ENST00000556353 CDKN1CP49918 316 aaPredicted RBP6.7□□□□□ -1.34
PRPF39-209ENST00000556353 KIF23Q02241 960 aaPredicted RBP6.7□□□□□ -1.34
PRPF39-209ENST00000556353 IL10RAQ13651 578 aa6.7□□□□□ -1.34
PRPF39-209ENST00000556353 CCDC142Q17RM4 750 aa6.7□□□□□ -1.34
PRPF39-209ENST00000556353 UTP14CQ5TAP6 766 aaKnown RBP6.7□□□□□ -1.34
PRPF39-209ENST00000556353 SP5Q6BEB4 398 aaPredicted RBP6.7□□□□□ -1.34
PRPF39-209ENST00000556353 LNX2Q8N448 690 aa6.7□□□□□ -1.34
PRPF39-209ENST00000556353 ACTRT2Q8TDY3 377 aa6.7□□□□□ -1.34
PRPF39-209ENST00000556353 SSH3Q8TE77 659 aa6.7□□□□□ -1.34
PRPF39-209ENST00000556353 NELL1Q92832 810 aa6.7□□□□□ -1.34
PRPF39-209ENST00000556353 TEKT5Q96M29 485 aa6.7□□□□□ -1.34
PRPF39-209ENST00000556353 CCDC8Q9H0W5 538 aaPredicted RBP6.7□□□□□ -1.34
PRPF39-209ENST00000556353 PRDM13Q9H4Q3 707 aa6.7□□□□□ -1.34
PRPF39-209ENST00000556353 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.7□□□□□ -1.34
PRPF39-209ENST00000556353 CDYLQ9Y232 598 aa6.7□□□□□ -1.34
PRPF39-209ENST00000556353 ARHGEF17Q96PE2 2063 aaPredicted RBP6.69□□□□□ -1.34
PRPF39-209ENST00000556353 MASP2O00187 686 aa6.69□□□□□ -1.34
PRPF39-209ENST00000556353 KATNA1O75449 491 aa6.69□□□□□ -1.34
PRPF39-209ENST00000556353 RPLP2P05387 115 aaKnown RBP6.69□□□□□ -1.34
PRPF39-209ENST00000556353 CD1AP06126 327 aa6.69□□□□□ -1.34
PRPF39-209ENST00000556353 CD38P28907 300 aa6.69□□□□□ -1.34
PRPF39-209ENST00000556353 PTH2RP49190 550 aa6.69□□□□□ -1.34
PRPF39-209ENST00000556353 ELLP55199 621 aaPredicted RBP6.69□□□□□ -1.34
PRPF39-209ENST00000556353 ZNF280AP59817 542 aaPredicted RBP6.69□□□□□ -1.34
PRPF39-209ENST00000556353 SIM1P81133 766 aaPredicted RBP6.69□□□□□ -1.34
PRPF39-209ENST00000556353 MRPS21P82921 87 aaKnown RBP6.69□□□□□ -1.34
PRPF39-209ENST00000556353 PCBP2Q15366 365 aaKnown RBP eCLIP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms