RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 EXTL3O43909 919 aa22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 PAPLNO95428 1278 aa22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 RPL17P18621 184 aaKnown RBP22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 EHHADHQ08426 723 aa22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 RAB33AQ14088 237 aa22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 ZNF280DQ6N043 979 aa22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 LILRA6Q6PI73 481 aa22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 HS2ST1Q7LGA3 356 aa22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 GLYCTKQ8IVS8 523 aa22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 C12orf76Q8N812 135 aaPredicted RBP22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 ZNF507Q8TCN5 953 aa22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 FAM213AQ9BRX8 229 aa22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 KIAA1586Q9HCI6 787 aa22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 CD320Q9NPF0 282 aa22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 EXOC1Q9NV70 894 aa22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 PCDHB8Q9UN66 801 aa22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 USTQ9Y2C2 406 aa22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 C2orf16Q68DN1 1984 aa22.38■■□□□ 1.17
CCDC88C-210ENST00000555995 DCXO43602 365 aa22.37■■□□□ 1.17
CCDC88C-210ENST00000555995 HNRNPA1P09651 372 aaKnown RBP eCLIP22.37■■□□□ 1.17
CCDC88C-210ENST00000555995 HOXA9P31269 272 aa22.37■■□□□ 1.17
CCDC88C-210ENST00000555995 SPAG1Q07617 926 aa22.37■■□□□ 1.17
CCDC88C-210ENST00000555995 PSMD2Q13200 908 aa22.37■■□□□ 1.17
CCDC88C-210ENST00000555995 VARS2Q5ST30 1063 aaKnown RBP22.37■■□□□ 1.17
CCDC88C-210ENST00000555995 CCDC149Q6ZUS6 474 aa22.37■■□□□ 1.17
CCDC88C-210ENST00000555995 EPM2AIP1Q7L775 607 aaPredicted RBP22.37■■□□□ 1.17
CCDC88C-210ENST00000555995 GPD1LQ8N335 351 aa22.37■■□□□ 1.17
CCDC88C-210ENST00000555995 RPGRIP1Q96KN7 1286 aa22.37■■□□□ 1.17
CCDC88C-210ENST00000555995 FGFBP2Q9BYJ0 223 aa22.37■■□□□ 1.17
CCDC88C-210ENST00000555995 BLZF1Q9H2G9 400 aa22.37■■□□□ 1.17
CCDC88C-210ENST00000555995 POMKQ9H5K3 350 aa22.37■■□□□ 1.17
CCDC88C-210ENST00000555995 RBAKQ9NYW8 714 aaPredicted RBP22.37■■□□□ 1.17
CCDC88C-210ENST00000555995 CCDC195A0A1B0GUA6 201 aa22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 GOLGA6L4A6NEF3 574 aa22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 PI4K2BG5E9Z4 385 aa22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 I3L4J1 428 aa22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 M0QZQ0 153 aa22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 ZMYND10O75800 440 aa22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 NFICP08651 508 aa22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 OR1D2P34982 312 aa22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 AARSP49588 968 aaKnown RBP eCLIP22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 CUL4BQ13620 913 aa22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 SURF1Q15526 300 aa22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 CRELD2Q6UXH1 353 aaPredicted RBP22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 PLCD3Q8N3E9 789 aa22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 FSIP1Q8NA03 581 aa22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 TDRD5Q8NAT2 981 aaKnown RBP22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 CACTINQ8WUQ7 758 aaKnown RBP22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 ACSF2Q96CM8 615 aaPredicted RBP22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 PAGE5Q96GU1 130 aa22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 CDY1Q9Y6F8 540 aa22.36■■□□□ 1.17
CCDC88C-210ENST00000555995 KIF20AO95235 890 aa22.35■■□□□ 1.17
CCDC88C-210ENST00000555995 BMT2Q1RMZ1 405 aa22.35■■□□□ 1.17
CCDC88C-210ENST00000555995 UVSSAQ2YD98 709 aa22.35■■□□□ 1.17
CCDC88C-210ENST00000555995 SLC8B1Q6J4K2 584 aa22.35■■□□□ 1.17
CCDC88C-210ENST00000555995 KANK3Q6NY19 840 aa22.35■■□□□ 1.17
CCDC88C-210ENST00000555995 DSTYKQ6XUX3 929 aa22.35■■□□□ 1.17
CCDC88C-210ENST00000555995 USP37Q86T82 979 aa22.35■■□□□ 1.17
CCDC88C-210ENST00000555995 GOLGA5Q8TBA6 731 aa22.35■■□□□ 1.17
CCDC88C-210ENST00000555995 SMG7Q92540 1137 aaKnown RBP22.35■■□□□ 1.17
CCDC88C-210ENST00000555995 SAAL1Q96ER3 474 aa22.35■■□□□ 1.17
CCDC88C-210ENST00000555995 ZNF560Q96MR9 790 aa22.35■■□□□ 1.17
CCDC88C-210ENST00000555995 CBWD1Q9BRT8 395 aa22.35■■□□□ 1.17
CCDC88C-210ENST00000555995 PIDD1Q9HB75 910 aa22.35■■□□□ 1.17
CCDC88C-210ENST00000555995 CIZ1Q9ULV3 898 aaPredicted RBP22.35■■□□□ 1.17
CCDC88C-210ENST00000555995 XYLBO75191 536 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 POU2F2P09086 479 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 ODC1P11926 461 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 TYMPP19971 482 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 PNPLA4P41247 253 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 NDUFA8P51970 172 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 YWHAHQ04917 246 aaPredicted RBP22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 MRPL58Q14197 206 aaKnown RBP22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 PPM1LQ5SGD2 360 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 C9orf57Q5W0N0 161 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 OTOP3Q7RTS5 596 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 RNF135Q8IUD6 432 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 HPS3Q969F9 1004 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 PRKD2Q9BZL6 878 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 IKZF4Q9H2S9 585 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 TSHZ2Q9NRE2 1034 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 DPP3Q9NY33 737 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 DSEQ9UL01 958 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 MAFFQ9ULX9 164 aa22.34■■□□□ 1.17
CCDC88C-210ENST00000555995 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.33■■□□□ 1.17
CCDC88C-210ENST00000555995 ANO9A1A5B4 782 aa22.33■■□□□ 1.17
CCDC88C-210ENST00000555995 ZNF233A6NK53 670 aa22.33■■□□□ 1.17
CCDC88C-210ENST00000555995 C8AP07357 584 aa22.33■■□□□ 1.17
CCDC88C-210ENST00000555995 SPATA31D3P0C874 917 aa22.33■■□□□ 1.17
CCDC88C-210ENST00000555995 ELF1P32519 619 aa22.33■■□□□ 1.17
CCDC88C-210ENST00000555995 CTXN3Q4LDR2 81 aa22.33■■□□□ 1.17
CCDC88C-210ENST00000555995 TPGS2Q68CL5 300 aa22.33■■□□□ 1.17
CCDC88C-210ENST00000555995 SPATA31D4Q6ZUB0 917 aa22.33■■□□□ 1.17
CCDC88C-210ENST00000555995 ZNF461Q8TAF7 563 aa22.33■■□□□ 1.17
CCDC88C-210ENST00000555995 SCFD1Q8WVM8 642 aa22.33■■□□□ 1.17
CCDC88C-210ENST00000555995 CHAMP1Q96JM3 812 aa22.33■■□□□ 1.17
CCDC88C-210ENST00000555995 SLC39A2Q9NP94 309 aa22.33■■□□□ 1.17
CCDC88C-210ENST00000555995 HSPBP1Q9NZL4 362 aa22.33■■□□□ 1.17
CCDC88C-210ENST00000555995 CLUHO75153 1309 aa22.32■■□□□ 1.16
CCDC88C-210ENST00000555995 MUC3AQ02505 3323 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms