RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 LNX2Q8N448 690 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.82□□□□□ -1.64
VPS13A-213ENST00000539950 ACTRT2Q8TDY3 377 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 PDLIM2Q96JY6 352 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 TLR10Q9BXR5 811 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 C11orf54Q9H0W9 315 aaPredicted RBP4.82□□□□□ -1.64
VPS13A-213ENST00000539950 LRIT1Q9P2V4 623 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 PCDHA13Q9Y5I0 950 aa4.82□□□□□ -1.64
VPS13A-213ENST00000539950 NDUFS2O75306 463 aa4.81□□□□□ -1.64
VPS13A-213ENST00000539950 HAUS5O94927 633 aa4.81□□□□□ -1.64
VPS13A-213ENST00000539950 MATN4O95460 622 aa4.81□□□□□ -1.64
VPS13A-213ENST00000539950 LMO1P25800 156 aa4.81□□□□□ -1.64
VPS13A-213ENST00000539950 IARSP41252 1262 aaKnown RBP4.81□□□□□ -1.64
VPS13A-213ENST00000539950 ZKSCAN2Q63HK3 967 aa4.81□□□□□ -1.64
VPS13A-213ENST00000539950 EGFLAMQ63HQ2 1017 aa4.81□□□□□ -1.64
VPS13A-213ENST00000539950 DDX42Q86XP3 938 aaKnown RBP eCLIP4.81□□□□□ -1.64
VPS13A-213ENST00000539950 JADE3Q92613 823 aa4.81□□□□□ -1.64
VPS13A-213ENST00000539950 MED15Q96RN5 788 aa4.81□□□□□ -1.64
VPS13A-213ENST00000539950 PRKAB1Q9Y478 270 aa4.81□□□□□ -1.64
VPS13A-213ENST00000539950 TRGV11A0A075B6L2 103 aa4.8□□□□□ -1.64
VPS13A-213ENST00000539950 LRRC3CA6NJW4 275 aa4.8□□□□□ -1.64
VPS13A-213ENST00000539950 GRM6O15303 877 aa4.8□□□□□ -1.64
VPS13A-213ENST00000539950 AGFG2O95081 481 aa4.8□□□□□ -1.64
VPS13A-213ENST00000539950 C5AR1P21730 350 aa4.8□□□□□ -1.64
VPS13A-213ENST00000539950 SF3B3Q15393 1217 aaKnown RBP4.8□□□□□ -1.64
VPS13A-213ENST00000539950 PGM2L1Q6PCE3 622 aa4.8□□□□□ -1.64
VPS13A-213ENST00000539950 ARHGEF25Q86VW2 580 aa4.8□□□□□ -1.64
VPS13A-213ENST00000539950 C1orf162Q8NEQ5 155 aaPredicted RBP4.8□□□□□ -1.64
VPS13A-213ENST00000539950 NLGN4YQ8NFZ3 816 aaPredicted RBP4.8□□□□□ -1.64
VPS13A-213ENST00000539950 IFI44Q8TCB0 444 aa4.8□□□□□ -1.64
VPS13A-213ENST00000539950 NELL1Q92832 810 aa4.8□□□□□ -1.64
VPS13A-213ENST00000539950 TMX3Q96JJ7 454 aa4.8□□□□□ -1.64
VPS13A-213ENST00000539950 SPATA5L1Q9BVQ7 753 aa4.8□□□□□ -1.64
VPS13A-213ENST00000539950 SEMA4GQ9NTN9 838 aa4.8□□□□□ -1.64
VPS13A-213ENST00000539950 TDP1Q9NUW8 608 aa4.8□□□□□ -1.64
VPS13A-213ENST00000539950 SLC5A4Q9NY91 659 aa4.8□□□□□ -1.64
VPS13A-213ENST00000539950 DMTF1Q9Y222 760 aa4.8□□□□□ -1.64
VPS13A-213ENST00000539950 MT-CO1P00395 513 aa4.79□□□□□ -1.64
VPS13A-213ENST00000539950 GATA3P23771 443 aa4.79□□□□□ -1.64
VPS13A-213ENST00000539950 CACNA2D1P54289 1103 aa4.79□□□□□ -1.64
VPS13A-213ENST00000539950 ZNF280AP59817 542 aaPredicted RBP4.79□□□□□ -1.64
VPS13A-213ENST00000539950 ATP2B3Q16720 1220 aa4.79□□□□□ -1.64
VPS13A-213ENST00000539950 FLYWCH1Q4VC44 716 aa4.79□□□□□ -1.64
VPS13A-213ENST00000539950 UTP14CQ5TAP6 766 aaKnown RBP4.79□□□□□ -1.64
VPS13A-213ENST00000539950 SP5Q6BEB4 398 aaPredicted RBP4.79□□□□□ -1.64
VPS13A-213ENST00000539950 MIGA2Q7L4E1 593 aa4.79□□□□□ -1.64
VPS13A-213ENST00000539950 RSPH3Q86UC2 560 aa4.79□□□□□ -1.64
VPS13A-213ENST00000539950 ZNF384Q8TF68 577 aa4.79□□□□□ -1.64
VPS13A-213ENST00000539950 SSH1Q8WYL5 1049 aa4.79□□□□□ -1.64
VPS13A-213ENST00000539950 TMEM125Q96AQ2 219 aa4.79□□□□□ -1.64
VPS13A-213ENST00000539950 PUS7LQ9H0K6 701 aaKnown RBP4.79□□□□□ -1.64
VPS13A-213ENST00000539950 KLK15Q9H2R5 256 aa4.79□□□□□ -1.64
VPS13A-213ENST00000539950 TMX1Q9H3N1 280 aa4.79□□□□□ -1.64
VPS13A-213ENST00000539950 MCM8Q9UJA3 840 aa4.79□□□□□ -1.64
VPS13A-213ENST00000539950 CDYLQ9Y232 598 aa4.79□□□□□ -1.64
VPS13A-213ENST00000539950 A0A1W2PS29 197 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 PEX1O43933 1283 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 PCDHGA12O60330 932 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 C1RP00736 705 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 EDNRBP24530 442 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 CDC42EP1Q00587 391 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 IL10RAQ13651 578 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 ACAP2Q15057 778 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 C3orf36Q3SXR2 165 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 PABPC1LQ4VXU2 614 aaKnown RBP4.78□□□□□ -1.64
VPS13A-213ENST00000539950 KIAA0895LQ68EN5 471 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 FAXDC2Q96IV6 333 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 IL17RBQ9NRM6 502 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 ASB6Q9NWX5 421 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 MKS1Q9NXB0 559 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 CTTNBP2NLQ9P2B4 639 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 SAP30BPQ9UHR5 308 aaKnown RBP4.78□□□□□ -1.64
VPS13A-213ENST00000539950 SLC45A2Q9UMX9 530 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 LIMCH1Q9UPQ0 1083 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 FRMD4BQ9Y2L6 1034 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 IPPQ9Y573 584 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 PCDHGA9Q9Y5G4 932 aaKnown RBP4.78□□□□□ -1.64
VPS13A-213ENST00000539950 PCDHGA8Q9Y5G5 932 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 PCDHGA7Q9Y5G6 932 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 PCDHGA6Q9Y5G7 932 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 PCDHGA3Q9Y5H0 932 aa4.78□□□□□ -1.64
VPS13A-213ENST00000539950 PRAMEF33A0A0G2JMD5 474 aa4.77□□□□□ -1.65
VPS13A-213ENST00000539950 YY2O15391 372 aa4.77□□□□□ -1.65
VPS13A-213ENST00000539950 PRAMEF10O60809 474 aa4.77□□□□□ -1.65
VPS13A-213ENST00000539950 RBMXL2O75526 392 aaKnown RBP4.77□□□□□ -1.65
VPS13A-213ENST00000539950 MTHFD1P11586 935 aaKnown RBP4.77□□□□□ -1.65
VPS13A-213ENST00000539950 KCNA2P16389 499 aa4.77□□□□□ -1.65
VPS13A-213ENST00000539950 FOLR3P41439 243 aa4.77□□□□□ -1.65
VPS13A-213ENST00000539950 NHLH1Q02575 133 aa4.77□□□□□ -1.65
VPS13A-213ENST00000539950 ABCB5Q2M3G0 1257 aa4.77□□□□□ -1.65
VPS13A-213ENST00000539950 CD300EQ496F6 205 aaPredicted RBP4.77□□□□□ -1.65
VPS13A-213ENST00000539950 VWA1Q6PCB0 445 aa4.77□□□□□ -1.65
VPS13A-213ENST00000539950 TSHZ1Q6ZSZ6 1077 aa4.77□□□□□ -1.65
VPS13A-213ENST00000539950 NECAB2Q7Z6G3 386 aa4.77□□□□□ -1.65
VPS13A-213ENST00000539950 NSUN7Q8NE18 718 aaKnown RBP4.77□□□□□ -1.65
VPS13A-213ENST00000539950 IL17RDQ8NFM7 739 aa4.77□□□□□ -1.65
VPS13A-213ENST00000539950 SLC30A5Q8TAD4 765 aa4.77□□□□□ -1.65
VPS13A-213ENST00000539950 HDAC10Q969S8 669 aa4.77□□□□□ -1.65
VPS13A-213ENST00000539950 KLHL32Q96NJ5 620 aa4.77□□□□□ -1.65
VPS13A-213ENST00000539950 SLC17A6Q9P2U8 582 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms