RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 EXOC1Q9NV70 894 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 TBC1D7Q9P0N9 293 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 PCDHB13Q9Y5F0 798 aa11.05□□□□□ -0.64
VPS28-204ENST00000526054 PRR23AA6NEV1 266 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 TTLL13PA6NNM8 815 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 PTGESO14684 152 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 GADD45BO75293 160 aaPredicted RBP11.04□□□□□ -0.64
VPS28-204ENST00000526054 PRPF40AO75400 957 aaKnown RBP11.04□□□□□ -0.64
VPS28-204ENST00000526054 TOM1L1O75674 476 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 PPP1R37O75864 691 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 RECQL4O94761 1208 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 PAPLNO95428 1278 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 PIGRP01833 764 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 MCF2P10911 925 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 SRFP11831 508 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 CASP1P29466 404 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 MATR3P43243 847 aaKnown RBP eCLIP11.04□□□□□ -0.64
VPS28-204ENST00000526054 SNW1Q13573 536 aaKnown RBP11.04□□□□□ -0.64
VPS28-204ENST00000526054 NOLC1Q14978 699 aaKnown RBP eCLIP11.04□□□□□ -0.64
VPS28-204ENST00000526054 POSTNQ15063 836 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 PSMD5Q16401 504 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 ZC2HC1CQ53FD0 456 aaPredicted RBP11.04□□□□□ -0.64
VPS28-204ENST00000526054 LIN9Q5TKA1 542 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 ASCL5Q7RTU5 278 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 CEP57Q86XR8 500 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 CCDC105Q8IYK2 499 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 ENGASEQ8NFI3 743 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 ACCSQ96QU6 501 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 RTP3Q9BQQ7 232 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 TTPALQ9BTX7 342 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 PRKD2Q9BZL6 878 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 CDT1Q9H211 546 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 SNTG2Q9NY99 539 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.04□□□□□ -0.642e-7■■■■□ 26
VPS28-204ENST00000526054 ANKFY1Q9P2R3 1169 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 WNT16Q9UBV4 365 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 FBXW11Q9UKB1 542 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 USP20Q9Y2K6 914 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 WDR87Q6ZQQ6 2873 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 UBE4BO95155 1302 aa11.04□□□□□ -0.64
VPS28-204ENST00000526054 RIF1Q5UIP0 2472 aaKnown RBP11.03□□□□□ -0.64
VPS28-204ENST00000526054 TRIP11Q15643 1979 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 STK25O00506 426 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 EIF3DO15371 548 aaKnown RBP eCLIP11.03□□□□□ -0.64
VPS28-204ENST00000526054 CLDN3O15551 220 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 PI15O43692 258 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 ZMYND10O75800 440 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 THP07101 528 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 PRR29P0C7W0 189 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 HARSP12081 509 aaKnown RBP11.03□□□□□ -0.64
VPS28-204ENST00000526054 LAMP2P13473 410 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 PROZP22891 400 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 ELAVL2Q12926 359 aaKnown RBP11.03□□□□□ -0.64
VPS28-204ENST00000526054 PSMD2Q13200 908 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 L1TD1Q5T7N2 865 aaKnown RBP11.03□□□□□ -0.64
VPS28-204ENST00000526054 FAM171A1Q5VUB5 890 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 LILRA6Q6PI73 481 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 FRMD5Q7Z6J6 570 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 SYCP3Q8IZU3 236 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 SLC44A3Q8N4M1 653 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 PIK3R5Q8WYR1 880 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 NKD2Q969F2 451 aaPredicted RBP11.03□□□□□ -0.64
VPS28-204ENST00000526054 NXPE3Q969Y0 559 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 CCDC94Q9BW85 323 aaPredicted RBP11.03□□□□□ -0.64
VPS28-204ENST00000526054 TMEM206Q9H813 350 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 PTPRHQ9HD43 1115 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 CA14Q9ULX7 337 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 GDAQ9Y2T3 454 aa11.03□□□□□ -0.64
VPS28-204ENST00000526054 PTPRZ1P23471 2315 aaPredicted RBP11.03□□□□□ -0.64
VPS28-204ENST00000526054 ZFHX2Q9C0A1 2572 aaPredicted RBP11.03□□□□□ -0.64
VPS28-204ENST00000526054 PDCD11Q14690 1871 aaKnown RBP11.02□□□□□ -0.64
VPS28-204ENST00000526054 KRBA1A5PL33 1030 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 KLRC4O43908 158 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 PRPF6O94906 941 aaKnown RBP11.02□□□□□ -0.65
VPS28-204ENST00000526054 SMC2O95347 1197 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 RPN1P04843 607 aaKnown RBP11.02□□□□□ -0.65
VPS28-204ENST00000526054 C8AP07357 584 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 FSHRP23945 695 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 GRM5P41594 1212 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 CASP5P51878 434 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 YARSP54577 528 aaKnown RBP11.02□□□□□ -0.65
VPS28-204ENST00000526054 MCL1Q07820 350 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 EHHADHQ08426 723 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 DPYDQ12882 1025 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 HTR4Q13639 388 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 ANGPT1Q15389 498 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 KYAT1Q16773 422 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 KMT5BQ4FZB7 885 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 GLRA4Q5JXX5 417 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 PPM1LQ5SGD2 360 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 SLFN12LQ6IEE8 588 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 PDXDC1Q6P996 788 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.02□□□□□ -0.65
VPS28-204ENST00000526054 ELOA2Q8IYF1 753 aaPredicted RBP11.02□□□□□ -0.65
VPS28-204ENST00000526054 DTWD2Q8NBA8 298 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 GPR152Q8TDT2 470 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 HPS3Q969F9 1004 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 STRA6Q9BX79 667 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 FGFBP2Q9BYJ0 223 aa11.02□□□□□ -0.65
VPS28-204ENST00000526054 CXCL16Q9H2A7 254 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms