RNA–Protein interactions for RNA: ENST00000519623.1

CSMD1-205, Transcript of CUB and Sushi multiple domains 1, human

TSL 4

Gene CSMD1, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD1-205	ENST00000519623	SLC5A9	Q2M3M2	681 aa		13.56	□□□□□ -0.24
CSMD1-205	ENST00000519623	CTXN3	Q4LDR2	81 aa		13.56	□□□□□ -0.24
CSMD1-205	ENST00000519623	ZBTB41	Q5SVQ8	909 aa		13.56	□□□□□ -0.24
CSMD1-205	ENST00000519623	TPGS2	Q68CL5	300 aa		13.56	□□□□□ -0.24
CSMD1-205	ENST00000519623	MTSS1L	Q765P7	747 aa		13.56	□□□□□ -0.24
CSMD1-205	ENST00000519623	FRMD5	Q7Z6J6	570 aa		13.56	□□□□□ -0.24
CSMD1-205	ENST00000519623	MYCT1	Q8N699	235 aa		13.56	□□□□□ -0.24
CSMD1-205	ENST00000519623	APPL2	Q8NEU8	664 aa		13.56	□□□□□ -0.24
CSMD1-205	ENST00000519623	ING5	Q8WYH8	240 aa		13.56	□□□□□ -0.24
CSMD1-205	ENST00000519623	RAD54L	Q92698	747 aa		13.56	□□□□□ -0.24
CSMD1-205	ENST00000519623	FIZ1	Q96SL8	496 aa		13.56	□□□□□ -0.24
CSMD1-205	ENST00000519623	GDE1	Q9NZC3	331 aa		13.56	□□□□□ -0.24
CSMD1-205	ENST00000519623	PCDHB8	Q9UN66	801 aa		13.56	□□□□□ -0.24
CSMD1-205	ENST00000519623	MRPS23	Q9Y3D9	190 aa	Known RBP	13.56	□□□□□ -0.24
CSMD1-205	ENST00000519623		A0A0B4J269	797 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	PRRG1	O14668	218 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	TRAK2	O60296	914 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	FAM13A	O94988	1023 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	OAZ2	O95190	189 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	DCN	P07585	359 aa	Known RBP	13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	CYP3A5	P20815	502 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	SCP2	P22307	547 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	MCM4	P33991	863 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	DDIT3	P35638	169 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	MATR3	P43243	847 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	ENOX2	Q16206	610 aa	Known RBP	13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	PRSS36	Q5K4E3	855 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	SLC39A4	Q6P5W5	647 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	USP49	Q70CQ1	688 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	MCRS1	Q96EZ8	462 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	KIF12	Q96FN5	646 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	BICD1	Q96G01	975 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	DDX23	Q9BUQ8	820 aa	Known RBP	13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	PLA2G2F	Q9BZM2	168 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	CCSER1	Q9C0I3	900 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	PARVG	Q9HBI0	331 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	CYP4F11	Q9HBI6	524 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	AFF4	Q9UHB7	1163 aa	Known RBP	13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	MAFF	Q9ULX9	164 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	SIT1	Q9Y3P8	196 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	VPS13A	Q96RL7	3174 aa		13.55	□□□□□ -0.24
CSMD1-205	ENST00000519623	SPTBN4	Q9H254	2564 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	CFAP54	Q96N23	3096 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	PRR23A	A6NEV1	266 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	NRG2	O14511	850 aa	Predicted RBP	13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	HNRNPDL	O14979	420 aa	Known RBP	13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	OGT	O15294	1046 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	LRG1	P02750	347 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	MARCKS	P29966	332 aa	Predicted RBP	13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	NMT1	P30419	496 aa	Known RBP	13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	AARS	P49588	968 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	LIG4	P49917	911 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	GUCY2F	P51841	1108 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	GTF2B	Q00403	316 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	ADCY1	Q08828	1119 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	SNW1	Q13573	536 aa	Known RBP	13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	PTPA	Q15257	358 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	KYAT1	Q16773	422 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	SLC44A4	Q53GD3	710 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	ZNF280D	Q6N043	979 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	TCEAL4	Q96EI5	215 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	EPSTI1	Q96J88	318 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	TSPAN18	Q96SJ8	248 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	KXD1	Q9BQD3	176 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	CORO1B	Q9BR76	489 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	FOXQ1	Q9C009	403 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	CEP72	Q9P209	647 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	CPSF3	Q9UKF6	684 aa	Known RBP	13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	UBQLN1	Q9UMX0	589 aa	Known RBP	13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	INSL5	Q9Y5Q6	135 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	CLIC4	Q9Y696	253 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	WDR87	Q6ZQQ6	2873 aa		13.54	□□□□□ -0.24
CSMD1-205	ENST00000519623	ANKRD63	C9JTQ0	380 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623		K7ENM7	598 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	ECI2	O75521	394 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	MICAL2	O94851	1124 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	VNN2	O95498	520 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	GLUL	P15104	373 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	CEBPB	P17676	345 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	RFX1	P22670	979 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	CCR2	P41597	374 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	PPP2R3A	Q06190	1150 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	SPECC1	Q5M775	1068 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	SPATA1	Q5VX52	437 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	TANGO2	Q6ICL3	276 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	RNF19B	Q6ZMZ0	732 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	BEST2	Q8NFU1	509 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	PJA1	Q8NG27	643 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	LARP4B	Q92615	738 aa	Known RBP	13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	SHD	Q96IW2	340 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	MSTO1	Q9BUK6	570 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	RPF1	Q9H9Y2	349 aa	Known RBP	13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	TIMM13	Q9Y5L4	95 aa	Predicted RBP	13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	COL4A3	Q01955	1670 aa		13.53	□□□□□ -0.24
CSMD1-205	ENST00000519623	EP300	Q09472	2414 aa	Predicted RBP	13.52	□□□□□ -0.24
CSMD1-205	ENST00000519623	GVINP1	Q7Z2Y8	2422 aa		13.52	□□□□□ -0.24
CSMD1-205	ENST00000519623	KANSL1L	A0AUZ9	987 aa		13.52	□□□□□ -0.25
CSMD1-205	ENST00000519623	VPS37C	A5D8V6	355 aa	Predicted RBP	13.52	□□□□□ -0.25
CSMD1-205	ENST00000519623	ZNF197	O14709	1029 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms