RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 WDR81Q562E7 1941 aa16.3■□□□□ 0.2
SDF4-207ENST00000494748 C6orf229H3BNL8 230 aa16.3■□□□□ 0.2
SDF4-207ENST00000494748 PTPN4P29074 926 aa16.3■□□□□ 0.2
SDF4-207ENST00000494748 SPARCL1Q14515 664 aa16.3■□□□□ 0.2
SDF4-207ENST00000494748 CCNG2Q16589 344 aa16.3■□□□□ 0.2
SDF4-207ENST00000494748 CYP4F22Q6NT55 531 aa16.3■□□□□ 0.2
SDF4-207ENST00000494748 SH3BP5LQ7L8J4 393 aa16.3■□□□□ 0.2
SDF4-207ENST00000494748 RBBP8NLQ8NC74 664 aaPredicted RBP16.3■□□□□ 0.2
SDF4-207ENST00000494748 LXNQ9BS40 222 aa16.3■□□□□ 0.2
SDF4-207ENST00000494748 HEMGNQ9BXL5 484 aa16.3■□□□□ 0.2
SDF4-207ENST00000494748 CADM1Q9BY67 442 aaKnown RBP16.3■□□□□ 0.2
SDF4-207ENST00000494748 SUGT1Q9Y2Z0 365 aa16.3■□□□□ 0.2
SDF4-207ENST00000494748 COQ4Q9Y3A0 265 aa16.3■□□□□ 0.2
SDF4-207ENST00000494748 C2CD2LO14523 706 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 AP1G2O75843 785 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 MAPK4P31152 587 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 SLC45A4Q5BKX6 768 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 PCNX4Q63HM2 1172 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 CLNKQ7Z7G1 428 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 CCDC125Q86Z20 511 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 A0A1W2PPM1 405 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 DDTLA6NHG4 134 aaPredicted RBP16.29■□□□□ 0.2
SDF4-207ENST00000494748 MYBL1P10243 752 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 GNAT1P11488 350 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 PCK1P35558 622 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 CETN1Q12798 172 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 MAPK6Q16659 721 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 DSTYKQ6XUX3 929 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 C4orf33Q8N1A6 199 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 XXYLT1Q8NBI6 393 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 MAIP1Q8WWC4 291 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 RPGRQ92834 1020 aaKnown RBP16.29■□□□□ 0.2
SDF4-207ENST00000494748 PTCD3Q96EY7 689 aaKnown RBP16.29■□□□□ 0.2
SDF4-207ENST00000494748 HLA-DOAP06340 250 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 ARP10275 920 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 NR1H3Q13133 447 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 TATDN1Q6P1N9 297 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 SLC30A9Q6PML9 568 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 MCOLN2Q8IZK6 566 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 CFAP61Q8NHU2 1237 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 PLVAPQ9BX97 442 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 MAK16Q9BXY0 300 aaKnown RBP16.29■□□□□ 0.2
SDF4-207ENST00000494748 DCLRE1BQ9H816 532 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 MYH9P35579 1960 aaKnown RBP16.29■□□□□ 0.2
SDF4-207ENST00000494748 MYPNQ86TC9 1320 aa16.29■□□□□ 0.2
SDF4-207ENST00000494748 EXOC1LA0A1B0GW35 172 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 PAPOLAP51003 745 aaKnown RBP16.28■□□□□ 0.2
SDF4-207ENST00000494748 GPC3P51654 580 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 MFAP3P55082 362 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 TAS2R40P59535 323 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 P3H1Q32P28 736 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 NLRP9Q7RTR0 991 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 AVENQ9NQS1 362 aaPredicted RBP16.28■□□□□ 0.2
SDF4-207ENST00000494748 KCNG1Q9UIX4 513 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 PCDHAC2Q9Y5I4 1007 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 MAPTP10636 758 aaKnown RBP16.28■□□□□ 0.2
SDF4-207ENST00000494748 KLC1Q07866 573 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 TMEM154Q6P9G4 183 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 LMNTD2Q8IXW0 634 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 OGFOD1Q8N543 542 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 RNF217Q8TC41 542 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 ZNF75CPQ92670 426 aaPredicted RBP16.28■□□□□ 0.2
SDF4-207ENST00000494748 SAR1AQ9NR31 198 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 PAPOLBQ9NRJ5 636 aaKnown RBP16.28■□□□□ 0.2
SDF4-207ENST00000494748 ETAA1Q9NY74 926 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.28■□□□□ 0.2
SDF4-207ENST00000494748 UBR3Q6ZT12 1888 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 GAS7O60861 476 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 NEFHP12036 1026 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 AP1ARQ63HQ0 302 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 PADI6Q6TGC4 694 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 APLFQ8IW19 511 aaPredicted RBP16.28■□□□□ 0.2
SDF4-207ENST00000494748 CCDC89Q8N998 374 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 TEKT4Q8WW24 435 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 TSC22D3Q99576 134 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 CCDC77Q9BR77 488 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 FHDC1Q9C0D6 1143 aaPredicted RBP16.28■□□□□ 0.2
SDF4-207ENST00000494748 TMEM206Q9H813 350 aa16.28■□□□□ 0.2
SDF4-207ENST00000494748 SMG5Q9UPR3 1016 aaKnown RBP16.28■□□□□ 0.2
SDF4-207ENST00000494748 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.28■□□□□ 0.2
SDF4-207ENST00000494748 MARK3P27448 753 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 UBXN2AP68543 259 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 GNPTABQ3T906 1256 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 CERKLQ49MI3 558 aaPredicted RBP16.27■□□□□ 0.2
SDF4-207ENST00000494748 MTDHQ86UE4 582 aaKnown RBP16.27■□□□□ 0.2
SDF4-207ENST00000494748 CBWD2Q8IUF1 395 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 GALNT15Q8N3T1 639 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 BBOF1Q8ND07 529 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 RFWD2Q8NHY2 731 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 SAYSD1Q9NPB0 183 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 ANKRD31Q8N7Z5 1873 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 A0A1W2PRG0 241 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 LRRD1A4D1F6 860 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 GOLGA8IPA6NC78 632 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 GOLGA8JA6NMD2 632 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 RFC5P40937 340 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 C2CD6Q53TS8 623 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 RNF220Q5VTB9 566 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 PHLDB2Q86SQ0 1253 aa16.27■□□□□ 0.2
SDF4-207ENST00000494748 MFN1Q8IWA4 741 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms