RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 NIF3L1Q9GZT8 377 aa23.26■■□□□ 1.31
SMC4-221ENST00000489573 UBQLN1Q9UMX0 589 aaKnown RBP23.26■■□□□ 1.31
SMC4-221ENST00000489573 R3HCC1Q9Y3T6 440 aaKnown RBP23.26■■□□□ 1.31
SMC4-221ENST00000489573 PITPNM1O00562 1244 aa23.25■■□□□ 1.31
SMC4-221ENST00000489573 OFD1O75665 1012 aa23.25■■□□□ 1.31
SMC4-221ENST00000489573 POLR2BP30876 1174 aaKnown RBP23.25■■□□□ 1.31
SMC4-221ENST00000489573 ATICP31939 592 aa23.25■■□□□ 1.31
SMC4-221ENST00000489573 GUCY2FP51841 1108 aa23.25■■□□□ 1.31
SMC4-221ENST00000489573 RBP5P82980 135 aa23.25■■□□□ 1.31
SMC4-221ENST00000489573 GLRA4Q5JXX5 417 aa23.25■■□□□ 1.31
SMC4-221ENST00000489573 VPS36Q86VN1 386 aa23.25■■□□□ 1.31
SMC4-221ENST00000489573 DIS3LQ8TF46 1054 aaKnown RBP23.25■■□□□ 1.31
SMC4-221ENST00000489573 ADAM2Q99965 735 aa23.25■■□□□ 1.31
SMC4-221ENST00000489573 SMIM28A0A1B0GU29 152 aa23.24■■□□□ 1.31
SMC4-221ENST00000489573 XPOTO43592 962 aaKnown RBP23.24■■□□□ 1.31
SMC4-221ENST00000489573 ZNF623O75123 536 aa23.24■■□□□ 1.31
SMC4-221ENST00000489573 C1orf53Q5VUE5 145 aa23.24■■□□□ 1.31
SMC4-221ENST00000489573 MRPL10Q7Z7H8 261 aaKnown RBP23.24■■□□□ 1.31
SMC4-221ENST00000489573 TMEM130Q8N3G9 435 aa23.24■■□□□ 1.31
SMC4-221ENST00000489573 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.24■■□□□ 1.317e-7■■□□□ 12.7
SMC4-221ENST00000489573 IFIH1Q9BYX4 1025 aaKnown RBP23.24■■□□□ 1.31
SMC4-221ENST00000489573 AGAP1Q9UPQ3 857 aa23.24■■□□□ 1.31
SMC4-221ENST00000489573 DCDC2CA8MYV0 355 aa23.23■■□□□ 1.31
SMC4-221ENST00000489573 ZNF263O14978 683 aa23.23■■□□□ 1.31
SMC4-221ENST00000489573 SKIP12755 728 aa23.23■■□□□ 1.31
SMC4-221ENST00000489573 KRT5P13647 590 aa23.23■■□□□ 1.31
SMC4-221ENST00000489573 GFPT1Q06210 699 aaPredicted RBP23.23■■□□□ 1.31
SMC4-221ENST00000489573 SLC18A3Q16572 532 aa23.23■■□□□ 1.31
SMC4-221ENST00000489573 ZNF667Q5HYK9 610 aa23.23■■□□□ 1.31
SMC4-221ENST00000489573 FAXDC2Q96IV6 333 aa23.23■■□□□ 1.31
SMC4-221ENST00000489573 TOX2Q96NM4 488 aa23.23■■□□□ 1.31
SMC4-221ENST00000489573 VRTNQ9H8Y1 702 aa23.23■■□□□ 1.31
SMC4-221ENST00000489573 TUBGCP4Q9UGJ1 667 aa23.23■■□□□ 1.31
SMC4-221ENST00000489573 A0A0U1RQF3 1178 aa23.23■■□□□ 1.31
SMC4-221ENST00000489573 CYP26A1O43174 497 aa23.23■■□□□ 1.31
SMC4-221ENST00000489573 STAU1O95793 577 aaKnown RBP23.23■■□□□ 1.31
SMC4-221ENST00000489573 ACO1P21399 889 aaKnown RBP23.23■■□□□ 1.31
SMC4-221ENST00000489573 CYP27A1Q02318 531 aa23.23■■□□□ 1.31
SMC4-221ENST00000489573 TRIM60Q495X7 471 aa23.23■■□□□ 1.31
SMC4-221ENST00000489573 C18orf25Q96B23 403 aaPredicted RBP23.23■■□□□ 1.31
SMC4-221ENST00000489573 ADAMTS1Q9UHI8 967 aa23.23■■□□□ 1.31
SMC4-221ENST00000489573 GIT1Q9Y2X7 761 aa23.23■■□□□ 1.31
SMC4-221ENST00000489573 CAPN2P17655 700 aa23.22■■□□□ 1.31
SMC4-221ENST00000489573 CLCN1P35523 988 aa23.22■■□□□ 1.31
SMC4-221ENST00000489573 BMS1Q14692 1282 aaKnown RBP23.22■■□□□ 1.31
SMC4-221ENST00000489573 SMYD5Q6GMV2 418 aa23.22■■□□□ 1.31
SMC4-221ENST00000489573 KIAA1328Q86T90 577 aa23.22■■□□□ 1.31
SMC4-221ENST00000489573 UBR7Q8N806 425 aa23.22■■□□□ 1.31
SMC4-221ENST00000489573 HPDLQ96IR7 371 aa23.22■■□□□ 1.31
SMC4-221ENST00000489573 SYT11Q9BT88 431 aa23.22■■□□□ 1.31
SMC4-221ENST00000489573 MCOLN1Q9GZU1 580 aa23.22■■□□□ 1.31
SMC4-221ENST00000489573 PDCD11Q14690 1871 aaKnown RBP23.21■■□□□ 1.31
SMC4-221ENST00000489573 A0A087X0T9 212 aa23.21■■□□□ 1.31
SMC4-221ENST00000489573 MEIS3P2A8K0S8 358 aa23.21■■□□□ 1.31
SMC4-221ENST00000489573 FAM228BP0C875 321 aa23.21■■□□□ 1.31
SMC4-221ENST00000489573 CYP3A5P20815 502 aa23.21■■□□□ 1.31
SMC4-221ENST00000489573 ASPAP45381 313 aa23.21■■□□□ 1.31
SMC4-221ENST00000489573 TLE2Q04725 743 aa23.21■■□□□ 1.31
SMC4-221ENST00000489573 NYAP1Q6ZVC0 841 aa23.21■■□□□ 1.31
SMC4-221ENST00000489573 LPPQ93052 612 aa23.21■■□□□ 1.31
SMC4-221ENST00000489573 PGBD4Q96DM1 585 aa23.21■■□□□ 1.31
SMC4-221ENST00000489573 C16orf45Q96MC5 204 aaPredicted RBP23.21■■□□□ 1.31
SMC4-221ENST00000489573 ZFP42Q96MM3 310 aa23.21■■□□□ 1.31
SMC4-221ENST00000489573 RPS6KC1Q96S38 1066 aa23.21■■□□□ 1.31
SMC4-221ENST00000489573 C11orf49Q9H6J7 331 aa23.21■■□□□ 1.31
SMC4-221ENST00000489573 RNF19AQ9NV58 838 aa23.21■■□□□ 1.31
SMC4-221ENST00000489573 NXF1Q9UBU9 619 aaKnown RBP23.21■■□□□ 1.31
SMC4-221ENST00000489573 PCDHB4Q9Y5E5 795 aa23.21■■□□□ 1.31
SMC4-221ENST00000489573 PCDHA13Q9Y5I0 950 aa23.21■■□□□ 1.31
SMC4-221ENST00000489573 PTGESO14684 152 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 NBNO60934 754 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 ATF7P17544 494 aaPredicted RBP23.2■■□□□ 1.3
SMC4-221ENST00000489573 MLH1P40692 756 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 PDE6CP51160 858 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 VAV2P52735 878 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 YWHAEP62258 255 aaKnown RBP23.2■■□□□ 1.3
SMC4-221ENST00000489573 FAAP100Q0VG06 881 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 MYO1EQ12965 1108 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 PTPN14Q15678 1187 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 WDR72Q3MJ13 1102 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 SCARA5Q6ZMJ2 495 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 AGMOQ6ZNB7 445 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 LRRC52Q8N7C0 313 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 OLIG1Q8TAK6 271 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 EPS8L1Q8TE68 723 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 AGPAT1Q99943 283 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 FTHL17Q9BXU8 183 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 HIPK3Q9H422 1215 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 LUC7LQ9NQ29 371 aaKnown RBP23.2■■□□□ 1.3
SMC4-221ENST00000489573 RGS18Q9NS28 235 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 POLIQ9UNA4 740 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 CNTN6Q9UQ52 1028 aa23.2■■□□□ 1.3
SMC4-221ENST00000489573 TRIP11Q15643 1979 aa23.19■■□□□ 1.3
SMC4-221ENST00000489573 A0A0U1RQJ8 604 aa23.19■■□□□ 1.3
SMC4-221ENST00000489573 DDX3XO00571 662 aaKnown RBP eCLIP23.19■■□□□ 1.34e-78■■■■■ 527.9
SMC4-221ENST00000489573 P4HA1P13674 534 aa23.19■■□□□ 1.3
SMC4-221ENST00000489573 CYP11B1P15538 503 aa23.19■■□□□ 1.3
SMC4-221ENST00000489573 ARHGAP29Q52LW3 1261 aa23.19■■□□□ 1.3
SMC4-221ENST00000489573 SLC47A2Q86VL8 602 aa23.19■■□□□ 1.3
SMC4-221ENST00000489573 ECHDC2Q86YB7 292 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms