RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 GNRHR2Q96P88 292 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 ADOQ96SZ5 270 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 CD244Q9BZW8 370 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 SCAND2PQ9GZW5 306 aaPredicted RBP4.72□□□□□ -1.65
HMGB1-204ENST00000399489 MAGEH1Q9H213 219 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 ZCCHC17Q9NP64 241 aaKnown RBP4.72□□□□□ -1.65
HMGB1-204ENST00000399489 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.72□□□□□ -1.65
HMGB1-204ENST00000399489 MAGED2Q9UNF1 606 aaPredicted RBP4.72□□□□□ -1.65
HMGB1-204ENST00000399489 HS3ST3A1Q9Y663 406 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 ATP23Q9Y6H3 246 aa4.72□□□□□ -1.65
HMGB1-204ENST00000399489 TTC36A6NLP5 189 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 AHCYL1O43865 530 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 NDUFS2O75306 463 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 POLBP06746 335 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 SRGAP2CP0DJJ0 459 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 CKMT1AP12532 417 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 OSMP13725 252 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 COMTP21964 271 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 PSMA3P25788 255 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 ATXN1P54253 815 aaKnown RBP4.71□□□□□ -1.66
HMGB1-204ENST00000399489 KRTAP10-9P60411 292 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 STARD3Q14849 445 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 POSTNQ15063 836 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 TAF5Q15542 800 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 UAP1L1Q3KQV9 507 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 NRN1LQ496H8 165 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 TCTN3Q6NUS6 607 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 ENOSF1Q7L5Y1 443 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 LRRTM4Q86VH4 590 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 COL23A1Q86Y22 540 aaPredicted RBP4.71□□□□□ -1.66
HMGB1-204ENST00000399489 ZFPM1Q8IX07 1006 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 FAM89AQ96GI7 184 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 NT5C1BQ96P26 610 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 TREX2Q9BQ50 279 aaPredicted RBP4.71□□□□□ -1.66
HMGB1-204ENST00000399489 SLC39A2Q9NP94 309 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 NSMCE4AQ9NXX6 385 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 NFKBIL1Q9UBC1 381 aaPredicted RBP4.71□□□□□ -1.66
HMGB1-204ENST00000399489 GPR34Q9UPC5 381 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 TELO2Q9Y4R8 837 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 GPR45Q9Y5Y3 372 aa4.71□□□□□ -1.66
HMGB1-204ENST00000399489 CCDC66A2RUB6 948 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 GTPBP10A4D1E9 387 aaKnown RBP4.7□□□□□ -1.66
HMGB1-204ENST00000399489 PABPN1LA6NDY0 278 aaKnown RBP4.7□□□□□ -1.66
HMGB1-204ENST00000399489 A6NLC8 198 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 SMTNL1A8MU46 457 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 WNT9AO14904 365 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 CLGNO14967 610 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 FFAR2O15552 330 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 KDM1AO60341 852 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 SKAP2O75563 359 aaPredicted RBP4.7□□□□□ -1.66
HMGB1-204ENST00000399489 FGF18O76093 207 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 ARIH2O95376 493 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 CNTFP26441 200 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 SRSF2Q01130 221 aaKnown RBP4.7□□□□□ -1.66
HMGB1-204ENST00000399489 KIF23Q02241 960 aaPredicted RBP4.7□□□□□ -1.66
HMGB1-204ENST00000399489 PMS2P11Q13670 270 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 CRY1Q16526 586 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 HIBCHQ6NVY1 386 aaPredicted RBP4.7□□□□□ -1.66
HMGB1-204ENST00000399489 TMCO3Q6UWJ1 677 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 ARHGAP36Q6ZRI8 547 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 CCDC129Q6ZRS4 1044 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 CXXC5Q7LFL8 322 aaKnown RBP4.7□□□□□ -1.66
HMGB1-204ENST00000399489 OTOP1Q7RTM1 612 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 LMNTD2Q8IXW0 634 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 MSL3Q8N5Y2 521 aaKnown RBP4.7□□□□□ -1.66
HMGB1-204ENST00000399489 ZNF610Q8N9Z0 462 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 SIMC1Q8NDZ2 872 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 ZNF622Q969S3 477 aaKnown RBP eCLIP4.7□□□□□ -1.668e-11■■■■■ 55.4
HMGB1-204ENST00000399489 ATP6V1E2Q96A05 226 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 ZC3H10Q96K80 434 aaKnown RBP4.7□□□□□ -1.66
HMGB1-204ENST00000399489 ZDHHC5Q9C0B5 715 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 C12orf65Q9H3J6 166 aaKnown RBP4.7□□□□□ -1.66
HMGB1-204ENST00000399489 ELAC1Q9H777 363 aaKnown RBP4.7□□□□□ -1.66
HMGB1-204ENST00000399489 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.7□□□□□ -1.66
HMGB1-204ENST00000399489 SRPK3Q9UPE1 567 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 NOC2LQ9Y3T9 749 aaKnown RBP4.7□□□□□ -1.66
HMGB1-204ENST00000399489 NR2E1Q9Y466 385 aa4.7□□□□□ -1.66
HMGB1-204ENST00000399489 LCHNA4D1U4 455 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 ACOT7O00154 380 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 IRAK2O43187 625 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 FOXS1O43638 330 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 DTNBO60941 627 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 TMEM127O75204 238 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 IL18BPO95998 194 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 IGHDP01880 384 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 MYF5P13349 255 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 PTPN1P18031 435 aaKnown RBP4.69□□□□□ -1.66
HMGB1-204ENST00000399489 CR2P20023 1033 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 LSP1P33241 339 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 ETV4P43268 484 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 MAN2A2P49641 1150 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 ZNF543Q08ER8 600 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 TOP3AQ13472 1001 aaPredicted RBP4.69□□□□□ -1.66
HMGB1-204ENST00000399489 SPARCL1Q14515 664 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 R3HDM1Q15032 1099 aaKnown RBP4.69□□□□□ -1.66
HMGB1-204ENST00000399489 PLCB4Q15147 1175 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 FIGNQ5HY92 759 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 FAM205BPQ63HN1 556 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 APOA5Q6Q788 366 aa4.69□□□□□ -1.66
HMGB1-204ENST00000399489 MAEAQ7L5Y9 396 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms