RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 LY9Q9HBG7 655 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 MPP6Q9NZW5 540 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 DDX20Q9UHI6 824 aaKnown RBP12.42□□□□□ -0.42
SYNPO-202ENST00000394243 KPNA4O00629 521 aaPredicted RBP12.42□□□□□ -0.42
SYNPO-202ENST00000394243 NME3Q13232 169 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 KCNB1Q14721 858 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 INAQ16352 499 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 TRIM63Q969Q1 353 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 KIAA1586Q9HCI6 787 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 CYLDQ9NQC7 956 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 ZNF518AQ6AHZ1 1483 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 KLK7P49862 253 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 AGAP3Q96P47 875 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 ITM2BQ9Y287 266 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 ADGRA3Q8IWK6 1321 aa12.42□□□□□ -0.42
SYNPO-202ENST00000394243 PSMA4P25789 261 aaKnown RBP12.41□□□□□ -0.42
SYNPO-202ENST00000394243 RFC5P40937 340 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 USP10Q14694 798 aaKnown RBP12.41□□□□□ -0.42
SYNPO-202ENST00000394243 TRIP4Q15650 581 aaPredicted RBP12.41□□□□□ -0.42
SYNPO-202ENST00000394243 PADI6Q6TGC4 694 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 SNX13Q9Y5W8 968 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 ANXA13P27216 316 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 FBXW4P57775 412 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 GPR101Q96P66 508 aaPredicted RBP12.41□□□□□ -0.42
SYNPO-202ENST00000394243 TRAPPC9Q96Q05 1148 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 POLE3Q9NRF9 147 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 ERVV-2B6SEH9 535 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 PYGMP11217 842 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 CLEC4GQ6UXB4 293 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 KDELC2Q7Z4H8 507 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 GRID1Q9ULK0 1009 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 SMAPO00193 183 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 ALDH1B1P30837 517 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 SERPINB5P36952 375 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 TAP1Q03518 808 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 CDHR1Q96JP9 859 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 ANKRD27Q96NW4 1050 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 SERPINB13Q9UIV8 391 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 APPL1Q9UKG1 709 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 PCDHA6Q9UN73 950 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 PCDHA8Q9Y5H6 950 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 CSADQ9Y600 493 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 MAGI2Q86UL8 1455 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 TAF4O00268 1085 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 SARSP49591 514 aaKnown RBP12.41□□□□□ -0.42
SYNPO-202ENST00000394243 MAPK11Q15759 364 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 MAP3K15Q6ZN16 1313 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 ZNF483Q8TF39 744 aaPredicted RBP12.41□□□□□ -0.42
SYNPO-202ENST00000394243 GOLPH3Q9H4A6 298 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 TMEM260Q9NX78 707 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 TRIM24O15164 1050 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 BCL10O95999 233 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 DSTYKQ6XUX3 929 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 ELMO2Q96JJ3 720 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 STRBPQ96SI9 672 aaKnown RBP12.41□□□□□ -0.42
SYNPO-202ENST00000394243 TMEM117Q9H0C3 514 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 HPS4Q9NQG7 708 aa12.41□□□□□ -0.42
SYNPO-202ENST00000394243 ZNF263O14978 683 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 CIITAP33076 1130 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 ATP2C1P98194 919 aaPredicted RBP12.4□□□□□ -0.42
SYNPO-202ENST00000394243 RCSD1Q6JBY9 416 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 FOXR1Q6PIV2 292 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 MTDHQ86UE4 582 aaKnown RBP12.4□□□□□ -0.42
SYNPO-202ENST00000394243 DIS3LQ8TF46 1054 aaKnown RBP12.4□□□□□ -0.42
SYNPO-202ENST00000394243 ARHGEF26Q96DR7 871 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 FAM111AQ96PZ2 611 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 DCUN1D5Q9BTE7 237 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 RMI1Q9H9A7 625 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 RXFP1Q9HBX9 757 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 ZSCAN32Q9NX65 697 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 SLC5A4Q9NY91 659 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 LMCD1Q9NZU5 365 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 TLR2O60603 784 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 ZNF23P17027 643 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 CALB2P22676 271 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 NDUFAF2Q8N183 169 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 SIX5Q8N196 739 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 FAM129AQ9BZQ8 928 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 CPVLQ9H3G5 476 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 SPATA2Q9UM82 520 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 BCS1LQ9Y276 419 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 F8VZ95 297 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 C4BPBP20851 252 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 PRELPP51888 382 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 KCNQ4P56696 695 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 C21orf59P57076 290 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 GEMIN4P57678 1058 aaKnown RBP12.4□□□□□ -0.42
SYNPO-202ENST00000394243 MFSD4BQ5TF39 518 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 TAS2R42Q7RTR8 314 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 NIM1KQ8IY84 436 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 TTC30BQ8N4P2 665 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 CPA5Q8WXQ8 436 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 PABPC3Q9H361 631 aaKnown RBP12.4□□□□□ -0.42
SYNPO-202ENST00000394243 H2AFY2Q9P0M6 372 aaPredicted RBP12.4□□□□□ -0.42
SYNPO-202ENST00000394243 PHKG2P15735 406 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 CDK8P49336 464 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 SEMA3FQ13275 785 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 TRAPPC11Q7Z392 1133 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 GINS4Q9BRT9 223 aa12.4□□□□□ -0.42
SYNPO-202ENST00000394243 TMEM79Q9BSE2 394 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms