RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 CENPPQ6IPU0 288 aa9.57□□□□□ -0.88
TPM3-213ENST00000368545 KCNV1Q6PIU1 500 aa9.57□□□□□ -0.88
TPM3-213ENST00000368545 C1orf186Q6ZWK4 172 aa9.57□□□□□ -0.88
TPM3-213ENST00000368545 ABRAQ8N0Z2 381 aa9.57□□□□□ -0.88
TPM3-213ENST00000368545 PIGOQ8TEQ8 1089 aa9.57□□□□□ -0.88
TPM3-213ENST00000368545 ATP6V0A1Q93050 837 aa9.57□□□□□ -0.88
TPM3-213ENST00000368545 CCDC43Q96MW1 224 aaKnown RBP9.57□□□□□ -0.88
TPM3-213ENST00000368545 TSG101Q99816 390 aa9.57□□□□□ -0.88
TPM3-213ENST00000368545 TIPINQ9BVW5 301 aa9.57□□□□□ -0.88
TPM3-213ENST00000368545 OLFML3Q9NRN5 406 aa9.57□□□□□ -0.88
TPM3-213ENST00000368545 LIMA1Q9UHB6 759 aaKnown RBP9.57□□□□□ -0.88
TPM3-213ENST00000368545 TRIM49BA6NDI0 452 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 MEIS3P2A8K0S8 358 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 DCXO43602 365 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 TIMP1P01033 207 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 TRIM60Q495X7 471 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 HSP90AA4PQ58FG1 418 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 TCP11X2Q5H9J9 407 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 WDR78Q5VTH9 848 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 MFSD5Q6N075 450 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 VHLLQ6RSH7 139 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 ANKRD33Q7Z3H0 272 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 RNF180Q86T96 592 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 VSTM4Q8IW00 320 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 WDR75Q8IWA0 830 aaKnown RBP9.56□□□□□ -0.88
TPM3-213ENST00000368545 CSGALNACT2Q8N6G5 542 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 RUSC1Q9BVN2 902 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 MARK1Q9P0L2 795 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 WRAP73Q9P2S5 460 aaPredicted RBP9.56□□□□□ -0.88
TPM3-213ENST00000368545 PCDHB10Q9UN67 800 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 PCDHA2Q9Y5H9 948 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 NPHP3-ACAD11A0A0J9YXS1 232 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 LRRC10BA6NIK2 292 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 KCNJ18B7U540 433 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 STRNO43815 780 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 CCNE2O96020 404 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 TPM2P07951 284 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 ACRP10323 421 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 CCND3P30281 292 aaPredicted RBP9.56□□□□□ -0.88
TPM3-213ENST00000368545 RARRES1P49788 294 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 PMS1P54277 932 aaKnown RBP9.56□□□□□ -0.88
TPM3-213ENST00000368545 KCNJ12Q14500 433 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 NEDD9Q14511 834 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 SLC10A6Q3KNW5 377 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 STXBP4Q6ZWJ1 553 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 CCDC186Q7Z3E2 898 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 TMC6Q7Z403 805 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 CCDC150Q8NCX0 1101 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 TMEM40Q8WWA1 233 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 HPS3Q969F9 1004 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 ZHX3Q9H4I2 956 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 PARVGQ9HBI0 331 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 ANKEF1Q9NU02 776 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 GEMIN8Q9NWZ8 242 aaKnown RBP9.56□□□□□ -0.88
TPM3-213ENST00000368545 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.56□□□□□ -0.88
TPM3-213ENST00000368545 MCM3APO60318 1980 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 UBE4BO95155 1302 aa9.56□□□□□ -0.88
TPM3-213ENST00000368545 ASB14A6NK59 587 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 PROB1E7EW31 1015 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 EIF3DO15371 548 aaKnown RBP eCLIP9.55□□□□□ -0.88
TPM3-213ENST00000368545 SELPP16109 830 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 YWHABP31946 246 aaKnown RBP9.55□□□□□ -0.88
TPM3-213ENST00000368545 ZNF131P52739 623 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 LAMC2Q13753 1193 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 FOXB2Q5VYV0 432 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 ANKRD40Q6AI12 368 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 MIS18BP1Q6P0N0 1132 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 OTUD6AQ7L8S5 288 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 APTXQ7Z2E3 356 aaKnown RBP9.55□□□□□ -0.88
TPM3-213ENST00000368545 VN1R5Q7Z5H4 357 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 SFR1Q86XK3 245 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 NAP1L5Q96NT1 182 aaPredicted RBP9.55□□□□□ -0.88
TPM3-213ENST00000368545 TRIM43BA6NCK2 446 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 NRDCO43847 1150 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 HTR3BO95264 441 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 PTGS1P23219 599 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 L1CAMP32004 1257 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 ACTR2P61160 394 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 GPLD1P80108 840 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 ADGRE1Q14246 886 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 NR1I3Q14994 352 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 KRT31Q15323 416 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 LONRF2Q1L5Z9 754 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 LEXMQ3ZCV2 418 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 SPECC1LQ69YQ0 1117 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 SEPT14Q6ZU15 432 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 PDZD3Q86UT5 571 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 TRIM43Q96BQ3 446 aaPredicted RBP9.55□□□□□ -0.88
TPM3-213ENST00000368545 FGD4Q96M96 766 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 PORCNQ9H237 461 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 INTS13Q9NVM9 706 aa9.55□□□□□ -0.88
TPM3-213ENST00000368545 IGSF9BQ9UPX0 1349 aa9.54□□□□□ -0.88
TPM3-213ENST00000368545 SEPT4O43236 478 aa9.54□□□□□ -0.88
TPM3-213ENST00000368545 BNIP3LO60238 219 aa9.54□□□□□ -0.88
TPM3-213ENST00000368545 PGK2P07205 417 aa9.54□□□□□ -0.88
TPM3-213ENST00000368545 PFKMP08237 780 aa9.54□□□□□ -0.88
TPM3-213ENST00000368545 SUPT20HL2P0C7V6 817 aa9.54□□□□□ -0.88
TPM3-213ENST00000368545 UBA1P22314 1058 aaKnown RBP9.54□□□□□ -0.88
TPM3-213ENST00000368545 COPB1P53618 953 aaKnown RBP9.54□□□□□ -0.88
TPM3-213ENST00000368545 FKBP3Q00688 224 aaKnown RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms