RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeastyeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DNL4YOR005C RFC4P40339 323 aaKnown RBP2.23□□□□□ -2.05
DNL4YOR005C MEP2P41948 499 aa2.23□□□□□ -2.05
DNL4YOR005C CIN2P46670 268 aa2.23□□□□□ -2.05
DNL4YOR005C CPD1P53314 239 aa2.23□□□□□ -2.05
DNL4YOR005C YMR279CQ03263 540 aa2.23□□□□□ -2.05
DNL4YOR005C SNX41Q04053 625 aa2.23□□□□□ -2.05
DNL4YOR005C YMR321CQ04898 105 aa2.23□□□□□ -2.05
DNL4YOR005C DCR2Q05924 578 aa2.23□□□□□ -2.05
DNL4YOR005C RDL2Q08742 149 aaKnown RBP2.23□□□□□ -2.05
DNL4YOR005C CSM4Q08955 156 aa2.23□□□□□ -2.05
DNL4YOR005C YPR063CQ12160 140 aa2.23□□□□□ -2.05
DNL4YOR005C YPR096CO13587 100 aa2.23□□□□□ -2.05
DNL4YOR005C MTF1P14908 341 aaKnown RBP2.23□□□□□ -2.05
DNL4YOR005C PRE7P23724 241 aaKnown RBP2.23□□□□□ -2.05
DNL4YOR005C YCR102CP25608 368 aa2.23□□□□□ -2.05
DNL4YOR005C IDH1P28834 360 aaKnown RBP RIP-Chip data2.23□□□□□ -2.05not detected
DNL4YOR005C TKL2P33315 681 aa2.23□□□□□ -2.05
DNL4YOR005C MTC4P38335 694 aaKnown RBP2.23□□□□□ -2.05
DNL4YOR005C PGD1P40356 397 aa2.23□□□□□ -2.05
DNL4YOR005C YIR016WP40572 265 aa2.23□□□□□ -2.05
DNL4YOR005C IDP2P41939 412 aa2.23□□□□□ -2.05
DNL4YOR005C PSA1P41940 361 aaKnown RBP2.23□□□□□ -2.05
DNL4YOR005C PFS2P42841 465 aaKnown RBP2.23□□□□□ -2.05
DNL4YOR005C YGR201CP42936 225 aa2.23□□□□□ -2.05
DNL4YOR005C TAD2P47058 250 aa2.23□□□□□ -2.05
DNL4YOR005C UBC13P52490 153 aa2.23□□□□□ -2.05
DNL4YOR005C HCH1P53834 153 aa2.23□□□□□ -2.05
DNL4YOR005C GAS2Q06135 555 aa2.23□□□□□ -2.05
DNL4YOR005C NDE2Q07500 545 aa2.23□□□□□ -2.05
DNL4YOR005C POM33Q12164 279 aa2.23□□□□□ -2.05
DNL4YOR005C ECM29P38737 1868 aa2.23□□□□□ -2.05
DNL4YOR005C ERD2P18414 219 aa2.23□□□□□ -2.05
DNL4YOR005C CKS1P20486 150 aaKnown RBP2.23□□□□□ -2.05
DNL4YOR005C SPO23P33757 523 aa2.23□□□□□ -2.05
DNL4YOR005C TIP20P33891 701 aa2.23□□□□□ -2.05
DNL4YOR005C YKL187CP34231 750 aa2.23□□□□□ -2.05
DNL4YOR005C SHE2P36068 246 aaKnown RBP RIP-Chip data2.23□□□□□ -2.05not detected
DNL4YOR005C IKI1P38874 309 aa2.23□□□□□ -2.05
DNL4YOR005C COX14P39103 70 aa2.23□□□□□ -2.05
DNL4YOR005C RPL10P41805 221 aaKnown RBP2.23□□□□□ -2.05
DNL4YOR005C GLR1P41921 483 aaKnown RBP2.23□□□□□ -2.05
DNL4YOR005C MOG1P47123 218 aa2.23□□□□□ -2.05
DNL4YOR005C SWC4P53201 476 aa2.23□□□□□ -2.05
DNL4YOR005C TPS1Q00764 495 aaKnown RBP2.23□□□□□ -2.05
DNL4YOR005C SPG3Q04398 127 aaPredicted RBP2.23□□□□□ -2.05
DNL4YOR005C ERP1Q05359 219 aaKnown RBP2.23□□□□□ -2.05
DNL4YOR005C FRE8Q12209 686 aa2.23□□□□□ -2.05
DNL4YOR005C AYT1Q12226 474 aa2.23□□□□□ -2.05
DNL4YOR005C RRP42Q12277 265 aaPredicted RBP2.23□□□□□ -2.05
DNL4YOR005C PIS1P06197 220 aaKnown RBP2.22□□□□□ -2.05
DNL4YOR005C POF1P25576 258 aa2.22□□□□□ -2.05
DNL4YOR005C ATS1P31386 333 aa2.22□□□□□ -2.05
DNL4YOR005C SEC17P32602 292 aa2.22□□□□□ -2.05
DNL4YOR005C CAT2P32796 670 aaKnown RBP2.22□□□□□ -2.05
DNL4YOR005C PRP18P33411 251 aaPredicted RBP2.22□□□□□ -2.05
DNL4YOR005C TMA19P35691 167 aaKnown RBP2.22□□□□□ -2.05
DNL4YOR005C YPC1P38298 316 aa2.22□□□□□ -2.05
DNL4YOR005C URA8P38627 578 aaPredicted RBP2.22□□□□□ -2.05
DNL4YOR005C MTC6P38849 526 aa2.22□□□□□ -2.05
DNL4YOR005C AIM2P39721 246 aa2.22□□□□□ -2.05
DNL4YOR005C POG1P40473 351 aa2.22□□□□□ -2.05
DNL4YOR005C TIM13P53299 105 aa2.22□□□□□ -2.05
DNL4YOR005C SAY1P53324 424 aa2.22□□□□□ -2.05
DNL4YOR005C RIM13Q03792 727 aa2.22□□□□□ -2.05
DNL4YOR005C UTP23Q12339 254 aaKnown RBP2.22□□□□□ -2.05
DNL4YOR005C PCL9Q12477 304 aa2.22□□□□□ -2.05
DNL4YOR005C RPL20AP0CX23 172 aaKnown RBP2.22□□□□□ -2.05
DNL4YOR005C RPL20BP0CX24 172 aaPredicted RBP2.22□□□□□ -2.05
DNL4YOR005C STE18P18852 110 aa2.22□□□□□ -2.05
DNL4YOR005C RPL16AP26784 199 aaKnown RBP2.22□□□□□ -2.05
DNL4YOR005C RPL16BP26785 198 aaKnown RBP2.22□□□□□ -2.05
DNL4YOR005C AGA1P32323 725 aa2.22□□□□□ -2.05
DNL4YOR005C SFC1P33303 322 aa2.22□□□□□ -2.05
DNL4YOR005C ERV15P38312 142 aa2.22□□□□□ -2.05
DNL4YOR005C MIC12P38341 106 aa2.22□□□□□ -2.05
DNL4YOR005C ERG28P40030 148 aa2.22□□□□□ -2.05
DNL4YOR005C YIL152WP40455 235 aa2.22□□□□□ -2.05
DNL4YOR005C BMT5P40493 336 aa2.22□□□□□ -2.05
DNL4YOR005C DFG10P40526 253 aa2.22□□□□□ -2.05
DNL4YOR005C RPR2P40571 144 aa2.22□□□□□ -2.05
DNL4YOR005C SNM1P40993 198 aa2.22□□□□□ -2.05
DNL4YOR005C AIM25P47140 327 aa2.22□□□□□ -2.05
DNL4YOR005C YNL140CP53910 189 aa2.22□□□□□ -2.05
DNL4YOR005C YPD1Q07688 167 aa2.22□□□□□ -2.05
DNL4YOR005C PRM4Q12498 284 aa2.22□□□□□ -2.05
DNL4YOR005C MHT1Q12525 324 aa2.22□□□□□ -2.05
DNL4YOR005C YGL194C-AQ2V2P6 80 aa2.22□□□□□ -2.05
DNL4YOR005C YKL183C-AQ3E765 70 aa2.22□□□□□ -2.05
DNL4YOR005C RPL15AP05748 204 aaKnown RBP2.21□□□□□ -2.06
DNL4YOR005C HEM4P06174 275 aa2.21□□□□□ -2.06
DNL4YOR005C CYC3P06182 269 aa2.21□□□□□ -2.06
DNL4YOR005C CDC7P06243 507 aa2.21□□□□□ -2.06
DNL4YOR005C PET9P18239 318 aaKnown RBP2.21□□□□□ -2.06
DNL4YOR005C SNF6P18888 332 aa2.21□□□□□ -2.06
DNL4YOR005C RNA15P25299 296 aaPredicted RBP2.21□□□□□ -2.06
DNL4YOR005C FUN26P31381 517 aa2.21□□□□□ -2.06
DNL4YOR005C CDC13P32797 924 aaKnown RBP2.21□□□□□ -2.06
DNL4YOR005C TRS65P32893 560 aa2.21□□□□□ -2.06
DNL4YOR005C SHE1P38200 338 aa2.21□□□□□ -2.06
DNL4YOR005C LCB3P47013 409 aa2.21□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 47.1 ms