RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	AAH1	P53909	347 aa		4.59	□□□□□ -1.67
UBP9	YER098W	SAE3	P89114	91 aa		4.59	□□□□□ -1.67
UBP9	YER098W	SHH3	Q04487	196 aa		4.59	□□□□□ -1.67
UBP9	YER098W	DIC1	Q06143	298 aa		4.59	□□□□□ -1.67
UBP9	YER098W	NMA1	Q06178	401 aa	Known RBP	4.59	□□□□□ -1.67
UBP9	YER098W	RFU1	Q08003	200 aa		4.59	□□□□□ -1.67
UBP9	YER098W	SRO7	Q12038	1033 aa		4.59	□□□□□ -1.67
UBP9	YER098W	BSC1	Q12140	328 aa		4.59	□□□□□ -1.67
UBP9	YER098W	PUT1	P09368	476 aa		4.58	□□□□□ -1.68
UBP9	YER098W	UBI4	P0CG63	381 aa	Known RBP	4.58	□□□□□ -1.68
UBP9	YER098W	RPL40A	P0CH08	128 aa	Known RBP	4.58	□□□□□ -1.68
UBP9	YER098W	RPL40B	P0CH09	128 aa	Known RBP	4.58	□□□□□ -1.68
UBP9	YER098W	EHD3	P28817	500 aa		4.58	□□□□□ -1.68
UBP9	YER098W	TIP20	P33891	701 aa		4.58	□□□□□ -1.68
UBP9	YER098W	PRM9	P39551	298 aa		4.58	□□□□□ -1.68
UBP9	YER098W	YPS6	P40583	537 aa		4.58	□□□□□ -1.68
UBP9	YER098W	YJR012C	P47087	207 aa		4.58	□□□□□ -1.68
UBP9	YER098W	YJR056C	P47115	236 aa		4.58	□□□□□ -1.68
UBP9	YER098W	YJR149W	P47177	404 aa		4.58	□□□□□ -1.68
UBP9	YER098W	SPP2	Q02521	185 aa		4.58	□□□□□ -1.68
UBP9	YER098W	SPG3	Q04398	127 aa	Predicted RBP	4.58	□□□□□ -1.68
UBP9	YER098W	FIT1	Q04433	528 aa		4.58	□□□□□ -1.68
UBP9	YER098W	SNT309	Q06091	175 aa	Predicted RBP	4.58	□□□□□ -1.68
UBP9	YER098W	FRQ1	Q06389	190 aa		4.58	□□□□□ -1.68
UBP9	YER098W	NOC4	Q06512	552 aa	Predicted RBP	4.58	□□□□□ -1.68
UBP9	YER098W	BER1	Q06688	274 aa	Known RBP	4.58	□□□□□ -1.68
UBP9	YER098W	PRM4	Q12498	284 aa		4.58	□□□□□ -1.68
UBP9	YER098W	YPT1	P01123	206 aa	Known RBP	4.58	□□□□□ -1.68
UBP9	YER098W	ADK1	P07170	222 aa	Known RBP	4.58	□□□□□ -1.68
UBP9	YER098W	RPS25B	P0C0T4	108 aa	Known RBP	4.58	□□□□□ -1.68
UBP9	YER098W	ATS1	P31386	333 aa		4.58	□□□□□ -1.68
UBP9	YER098W	RIB5	P38145	238 aa		4.58	□□□□□ -1.68
UBP9	YER098W	SHE3	P38272	425 aa	Known RBP	4.58	□□□□□ -1.68
UBP9	YER098W	SSH1	P38353	490 aa	Known RBP	4.58	□□□□□ -1.68
UBP9	YER098W	STE24	P47154	453 aa		4.58	□□□□□ -1.68
UBP9	YER098W	OST3	P48439	350 aa		4.58	□□□□□ -1.68
UBP9	YER098W	YGR042W	P53227	271 aa		4.58	□□□□□ -1.68
UBP9	YER098W	YDR366C	P87287	132 aa		4.58	□□□□□ -1.68
UBP9	YER098W	GMC1	Q04399	608 aa		4.58	□□□□□ -1.68
UBP9	YER098W	YMR310C	Q04867	317 aa	Predicted RBP	4.58	□□□□□ -1.68
UBP9	YER098W	ELP6	Q04868	273 aa		4.58	□□□□□ -1.68
UBP9	YER098W	DDC1	Q08949	612 aa		4.58	□□□□□ -1.68
UBP9	YER098W	FCF2	Q12035	217 aa	Predicted RBP	4.58	□□□□□ -1.68
UBP9	YER098W	BTS1	Q12051	335 aa		4.58	□□□□□ -1.68
UBP9	YER098W	RPS25A	Q3E792	108 aa	Predicted RBP	4.58	□□□□□ -1.68
UBP9	YER098W	DRE2	P36152	348 aa		4.57	□□□□□ -1.68
UBP9	YER098W	YER079W	P40052	210 aa	Known RBP	4.57	□□□□□ -1.68
UBP9	YER098W	ECM7	Q06200	448 aa		4.57	□□□□□ -1.68
UBP9	YER098W	RRT7	Q07829	113 aa		4.57	□□□□□ -1.68
UBP9	YER098W	POM33	Q12164	279 aa		4.57	□□□□□ -1.68
UBP9	YER098W	RNH203	Q12338	110 aa		4.57	□□□□□ -1.68
UBP9	YER098W	YDL085C-A	Q3E7B7	68 aa	Known RBP	4.57	□□□□□ -1.68
UBP9	YER098W	HAP2	P06774	265 aa		4.57	□□□□□ -1.68
UBP9	YER098W	SGA1	P08019	549 aa		4.57	□□□□□ -1.68
UBP9	YER098W	ATP5	P09457	212 aa		4.57	□□□□□ -1.68
UBP9	YER098W	RPL31A	P0C2H8	113 aa	Known RBP	4.57	□□□□□ -1.68
UBP9	YER098W	SCL1	P21243	252 aa	Known RBP	4.57	□□□□□ -1.68
UBP9	YER098W	PRE1	P22141	198 aa	Known RBP	4.57	□□□□□ -1.68
UBP9	YER098W	RBK1	P25332	333 aa		4.57	□□□□□ -1.68
UBP9	YER098W	CPR4	P25334	318 aa		4.57	□□□□□ -1.68
UBP9	YER098W	MCR1	P36060	302 aa	Known RBP	4.57	□□□□□ -1.68
UBP9	YER098W	URA8	P38627	578 aa	Predicted RBP	4.57	□□□□□ -1.68
UBP9	YER098W	MOB2	P43563	287 aa		4.57	□□□□□ -1.68
UBP9	YER098W	LOC1	P43586	204 aa	Predicted RBP	4.57	□□□□□ -1.68
UBP9	YER098W	VHT1	P53241	593 aa		4.57	□□□□□ -1.68
UBP9	YER098W	EST3	Q03096	181 aa		4.57	□□□□□ -1.68
UBP9	YER098W	CAB5	Q03941	241 aa		4.57	□□□□□ -1.68
UBP9	YER098W	TVP18	Q04767	167 aa		4.57	□□□□□ -1.68
UBP9	YER098W	RTT103	Q05543	409 aa		4.57	□□□□□ -1.68
UBP9	YER098W	MMT2	Q08970	484 aa		4.57	□□□□□ -1.68
UBP9	YER098W	PCL9	Q12477	304 aa		4.57	□□□□□ -1.68
UBP9	YER098W	FSH3	Q99369	266 aa		4.57	□□□□□ -1.68
UBP9	YER098W	OPI3	P05375	206 aa		4.56	□□□□□ -1.68
UBP9	YER098W	EPT1	P22140	391 aa		4.56	□□□□□ -1.68
UBP9	YER098W	PAC2	P39937	518 aa		4.56	□□□□□ -1.68
UBP9	YER098W	SYS1	P41544	203 aa		4.56	□□□□□ -1.68
UBP9	YER098W	PCP1	P53259	346 aa		4.56	□□□□□ -1.68
UBP9	YER098W	YLR036C	Q07986	203 aa		4.56	□□□□□ -1.68
UBP9	YER098W	NAT5	Q08689	176 aa		4.56	□□□□□ -1.68
UBP9	YER098W	COX2	P00410	251 aa		4.56	□□□□□ -1.68
UBP9	YER098W	ERG1	P32476	496 aa	Known RBP	4.56	□□□□□ -1.68
UBP9	YER098W	SPS19	P32573	292 aa	Known RBP	4.56	□□□□□ -1.68
UBP9	YER098W	YEF1	P32622	495 aa		4.56	□□□□□ -1.68
UBP9	YER098W	PAN3	P36102	679 aa	Predicted RBP	4.56	□□□□□ -1.68
UBP9	YER098W	YCR087C-A	P37263	153 aa		4.56	□□□□□ -1.68
UBP9	YER098W	MOH1	P38191	138 aa		4.56	□□□□□ -1.68
UBP9	YER098W	YPT31	P38555	223 aa	Known RBP	4.56	□□□□□ -1.68
UBP9	YER098W	RIB4	P50861	169 aa	Predicted RBP	4.56	□□□□□ -1.68
UBP9	YER098W	YPR127W	Q06494	345 aa		4.56	□□□□□ -1.68
UBP9	YER098W	SPO24	Q3E752	67 aa		4.56	□□□□□ -1.68
UBP9	YER098W	COA6	Q3E846	104 aa		4.56	□□□□□ -1.68
UBP9	YER098W	HAP3	P13434	144 aa		4.55	□□□□□ -1.68
UBP9	YER098W	GSP1	P32835	219 aa	Known RBP	4.55	□□□□□ -1.68
UBP9	YER098W	GSP2	P32836	220 aa	Known RBP	4.55	□□□□□ -1.68
UBP9	YER098W	YIL152W	P40455	235 aa		4.55	□□□□□ -1.68
UBP9	YER098W	PAU15	P40585	124 aa		4.55	□□□□□ -1.68
UBP9	YER098W	VPS25	P47142	202 aa		4.55	□□□□□ -1.68
UBP9	YER098W	SLX9	P53251	210 aa	Predicted RBP	4.55	□□□□□ -1.68
UBP9	YER098W	YNR066C	P53752	436 aa		4.55	□□□□□ -1.68
UBP9	YER098W	CTL1	Q03220	320 aa	Known RBP	4.55	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 8.8 ms