RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 VWA3AA6NCI4 1184 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 PP2D1A8MPX8 630 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 SLC16A4O15374 487 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 CCL16O15467 120 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 NARSO43776 548 aaKnown RBP13.02□□□□□ -0.33
UPF3B-204ENST00000619445 LRG1P02750 347 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 GJB2P29033 226 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 TKTP29401 623 aaKnown RBP13.02□□□□□ -0.33
UPF3B-204ENST00000619445 UBA7P41226 1012 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 PRKCQQ04759 706 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 IL17AQ16552 155 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 VARS2Q5ST30 1063 aaKnown RBP13.02□□□□□ -0.33
UPF3B-204ENST00000619445 RSPO2Q6UXX9 243 aaPredicted RBP13.02□□□□□ -0.33
UPF3B-204ENST00000619445 TAS1R3Q7RTX0 852 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 BRAPQ7Z569 592 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 CEP120Q8N960 986 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 TMEM161BQ8NDZ6 487 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 GPR152Q8TDT2 470 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 RSAD2Q8WXG1 361 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 TBC1D17Q9HA65 648 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 POLD4Q9HCU8 107 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 SMC3Q9UQE7 1217 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 USP34Q70CQ2 3546 aa13.02□□□□□ -0.33
UPF3B-204ENST00000619445 MYH15Q9Y2K3 1946 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 KRBA1A5PL33 1030 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 PRRG1O14668 218 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 ZNF197O14709 1029 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 ADAM12O43184 909 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 MICAL2O94851 1124 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 ABLIM3O94929 683 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 CLTAP09496 248 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 PLA2G4BP0C869 781 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 MAPTP10636 758 aaKnown RBP13.01□□□□□ -0.33
UPF3B-204ENST00000619445 ATF2P15336 505 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 PTPN2P17706 415 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 CDC25AP30304 524 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 MAGEA9P43362 315 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 SLC12A3P55017 1021 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 OSTNP61366 133 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 MCL1Q07820 350 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 ANGPT1Q15389 498 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 ZNF280DQ6N043 979 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 ZC3H14Q6PJT7 736 aaKnown RBP13.01□□□□□ -0.33
UPF3B-204ENST00000619445 TCEAL8Q8IYN2 117 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 ELMOD1Q8N336 334 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 LEMD2Q8NC56 503 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 BICD1Q96G01 975 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 SUSD3Q96L08 255 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 OSBPL6Q9BZF3 934 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 CXCL16Q9H2A7 254 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 GOLGA2P5Q9HBQ8 144 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 ANKFY1Q9P2R3 1169 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 CA14Q9ULX7 337 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 MRPS23Q9Y3D9 190 aaKnown RBP13.01□□□□□ -0.33
UPF3B-204ENST00000619445 SIT1Q9Y3P8 196 aa13.01□□□□□ -0.33
UPF3B-204ENST00000619445 EP300Q09472 2414 aaPredicted RBP13.01□□□□□ -0.33
UPF3B-204ENST00000619445 PRR23AA6NEV1 266 aa13□□□□□ -0.33
UPF3B-204ENST00000619445 ABLIM1O14639 778 aa13□□□□□ -0.33
UPF3B-204ENST00000619445 PI15O43692 258 aa13□□□□□ -0.33
UPF3B-204ENST00000619445 CYP3A5P20815 502 aa13□□□□□ -0.33
UPF3B-204ENST00000619445 MARCKSP29966 332 aaPredicted RBP13□□□□□ -0.33
UPF3B-204ENST00000619445 LONP1P36776 959 aaKnown RBP13□□□□□ -0.33
UPF3B-204ENST00000619445 MATR3P43243 847 aaKnown RBP eCLIP13□□□□□ -0.33
UPF3B-204ENST00000619445 BRCC3P46736 316 aa13□□□□□ -0.33
UPF3B-204ENST00000619445 STARD6P59095 220 aa13□□□□□ -0.33
UPF3B-204ENST00000619445 ROR1Q01973 937 aa13□□□□□ -0.33
UPF3B-204ENST00000619445 SOX4Q06945 474 aaPredicted RBP13□□□□□ -0.33
UPF3B-204ENST00000619445 MRPL58Q14197 206 aaKnown RBP13□□□□□ -0.33
UPF3B-204ENST00000619445 TMEM119Q4V9L6 283 aa13□□□□□ -0.33
UPF3B-204ENST00000619445 CD300LGQ6UXG3 332 aa13□□□□□ -0.33
UPF3B-204ENST00000619445 KCNK18Q7Z418 384 aa13□□□□□ -0.33
UPF3B-204ENST00000619445 CD302Q8IX05 232 aa13□□□□□ -0.33
UPF3B-204ENST00000619445 C3orf58Q8NDZ4 430 aa13□□□□□ -0.33
UPF3B-204ENST00000619445 ZMAT2Q96NC0 199 aaKnown RBP13□□□□□ -0.33
UPF3B-204ENST00000619445 NELL2Q99435 816 aa13□□□□□ -0.33
UPF3B-204ENST00000619445 UBQLN1Q9UMX0 589 aaKnown RBP13□□□□□ -0.33
UPF3B-204ENST00000619445 MIA3Q5JRA6 1907 aa13□□□□□ -0.33
UPF3B-204ENST00000619445 SFI1A8K8P3 1242 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 TBC1D4O60343 1298 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 ECI2O75521 394 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 RHOP08100 348 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 HARSP12081 509 aaKnown RBP12.99□□□□□ -0.33
UPF3B-204ENST00000619445 PDCP20941 246 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 MCM4P33991 863 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 LIG4P49917 911 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 NCKAP1LP55160 1127 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 PPP2R3AQ06190 1150 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 SLC10A6Q3KNW5 377 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 CTXN3Q4LDR2 81 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 LARP1BQ659C4 914 aaKnown RBP12.99□□□□□ -0.33
UPF3B-204ENST00000619445 IQCEQ6IPM2 695 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 PARM1Q6UWI2 310 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 HAUS6Q7Z4H7 955 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 NPAS3Q8IXF0 933 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 PJA1Q8NG27 643 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 RASSF8Q8NHQ8 419 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 FGF14Q92915 247 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 PNMA5Q96PV4 448 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 PARVGQ9HBI0 331 aa12.99□□□□□ -0.33
UPF3B-204ENST00000619445 DNMT3BQ9UBC3 853 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms