RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 SYN3O14994 580 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 TOM1L1O75674 476 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 LRG1P02750 347 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 PLS3P13797 630 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 KCNE1P15382 129 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 GJB2P29033 226 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 RPL9P32969 192 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 GPC5P78333 572 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 ROR1Q01973 937 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 NOLC1Q14978 699 aaKnown RBP eCLIP12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 SPECC1Q5M775 1068 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 VARS2Q5ST30 1063 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 SLC8B1Q6J4K2 584 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 SYT2Q8N9I0 419 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 ZNF461Q8TAF7 563 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 C18orf25Q96B23 403 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 SHDQ96IW2 340 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 TMX3Q96JJ7 454 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 PNMA5Q96PV4 448 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 KCND2Q9NZV8 630 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 CNTN3Q9P232 1028 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 DNMT3BQ9UBC3 853 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 KCNH3Q9ULD8 1083 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 MRPS23Q9Y3D9 190 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 SIT1Q9Y3P8 196 aa12.11□□□□□ -0.47
CCDC88C-213ENST00000557455 WDR27A2RRH5 827 aa12.1□□□□□ -0.47
CCDC88C-213ENST00000557455 H7C4K7 107 aa12.1□□□□□ -0.47
CCDC88C-213ENST00000557455 PRRG1O14668 218 aa12.1□□□□□ -0.47
CCDC88C-213ENST00000557455 CLDN3O15551 220 aa12.1□□□□□ -0.47
CCDC88C-213ENST00000557455 ABLIM3O94929 683 aa12.1□□□□□ -0.47
CCDC88C-213ENST00000557455 DCNP07585 359 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-213ENST00000557455 PLA2G4BP0C869 781 aa12.1□□□□□ -0.47
CCDC88C-213ENST00000557455 MATR3P43243 847 aaKnown RBP eCLIP12.1□□□□□ -0.47
CCDC88C-213ENST00000557455 SLC12A3P55017 1021 aa12.1□□□□□ -0.47
CCDC88C-213ENST00000557455 ARPP19P56211 112 aa12.1□□□□□ -0.47
CCDC88C-213ENST00000557455 SEZ6Q53EL9 994 aa12.1□□□□□ -0.47
CCDC88C-213ENST00000557455 ARL6IP4Q66PJ3 421 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-213ENST00000557455 TMEM161BQ8NDZ6 487 aa12.1□□□□□ -0.47
CCDC88C-213ENST00000557455 ING5Q8WYH8 240 aa12.1□□□□□ -0.47
CCDC88C-213ENST00000557455 PTPRZ1P23471 2315 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 RIF1Q5UIP0 2472 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 ARHGEF37A1IGU5 675 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 H0YCG3 227 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 MEFVO15553 781 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 TBC1D4O60343 1298 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 RHOP08100 348 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 MAPTP10636 758 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 PTPN2P17706 415 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 MCM4P33991 863 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 STARD6P59095 220 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 CACNB1Q02641 598 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 SNW1Q13573 536 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 SLC10A6Q3KNW5 377 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 ZPBP2Q6X784 338 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 NPAS3Q8IXF0 933 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 PJA1Q8NG27 643 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 MCRS1Q96EZ8 462 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 BICD1Q96G01 975 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 SUSD3Q96L08 255 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 KXD1Q9BQD3 176 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 FOXQ1Q9C009 403 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 CYP4F11Q9HBI6 524 aa12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 LARSQ9P2J5 1176 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-213ENST00000557455 FAM186AA6NE01 2351 aa12.08□□□□□ -0.47
CCDC88C-213ENST00000557455 FANCMQ8IYD8 2048 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 NPHP3-ACAD11A0A0J9YXS1 232 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 KANSL1LA0AUZ9 987 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 ATF2P15336 505 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 MARCKSP29966 332 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 UBA7P41226 1012 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 PFKPQ01813 784 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 MCL1Q07820 350 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 MRPL58Q14197 206 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 MLF2Q15773 248 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 SLC5A9Q2M3M2 681 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 CTXN3Q4LDR2 81 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 TMEM119Q4V9L6 283 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 SLC44A4Q53GD3 710 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 TPGS2Q68CL5 300 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 ZNF280DQ6N043 979 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 TCEAL8Q8IYN2 117 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 APPL2Q8NEU8 664 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 DDX12PQ92771 950 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 CALML4Q96GE6 196 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 AK8Q96MA6 479 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 TBC1D32Q96NH3 1257 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 PLEKHA5Q9HAU0 1116 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 UPF2Q9HAU5 1272 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 AVENQ9NQS1 362 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 GDE1Q9NZC3 331 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 DLGAP2Q9P1A6 1054 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 TUBGCP4Q9UGJ1 667 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 FBXL5Q9UKA1 691 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 SMC3Q9UQE7 1217 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 ANK1P16157 1881 aa12.08□□□□□ -0.48
CCDC88C-213ENST00000557455 COL4A3Q01955 1670 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 PATJQ8NI35 1801 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 SLC26A4O43511 780 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 ECI2O75521 394 aa12.07□□□□□ -0.48
CCDC88C-213ENST00000557455 CD2BP2O95400 341 aaKnown RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms