RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 HDAC7Q8WUI4 952 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 RIN2Q8WYP3 895 aaPredicted RBP12.44□□□□□ -0.42
YBX3-216ENST00000544622 HPS3Q969F9 1004 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 SPATA32Q96LK8 384 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 ACCSQ96QU6 501 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 PYM1Q9BRP8 204 aaKnown RBP12.44□□□□□ -0.42
YBX3-216ENST00000544622 PHF7Q9BWX1 381 aaPredicted RBP12.44□□□□□ -0.42
YBX3-216ENST00000544622 RHOBTB2Q9BYZ6 727 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 SCAND2PQ9GZW5 306 aaPredicted RBP12.44□□□□□ -0.42
YBX3-216ENST00000544622 DZANK1Q9NVP4 752 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 TUBGCP4Q9UGJ1 667 aa12.44□□□□□ -0.42
YBX3-216ENST00000544622 AGO2Q9UKV8 859 aaKnown RBP12.44□□□□□ -0.42
YBX3-216ENST00000544622 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.44□□□□□ -0.42
YBX3-216ENST00000544622 A0A1B0GVL5 298 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 PVALEFA0A1B0GWK0 134 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 TRAPPC3O43617 180 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 PFKFB1P16118 471 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 RPL17P18621 184 aaKnown RBP12.43□□□□□ -0.42
YBX3-216ENST00000544622 GARTP22102 1010 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 CASP1P29466 404 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 MATR3P43243 847 aaKnown RBP eCLIP12.43□□□□□ -0.42
YBX3-216ENST00000544622 BRCC3P46736 316 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 AARSP49588 968 aaKnown RBP eCLIP12.43□□□□□ -0.42
YBX3-216ENST00000544622 ACOT2P49753 483 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 CREMQ03060 361 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 SPAG1Q07617 926 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 CUL4BQ13620 913 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 POSTNQ15063 836 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 SPATA1Q5VX52 437 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 PRSS55Q6UWB4 352 aaPredicted RBP12.43□□□□□ -0.42
YBX3-216ENST00000544622 C15orf39Q6ZRI6 1047 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 UNC13DQ70J99 1090 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 TMEM130Q8N3G9 435 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 C12orf76Q8N812 135 aaPredicted RBP12.43□□□□□ -0.42
YBX3-216ENST00000544622 TMEM87AQ8NBN3 555 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 CMASQ8NFW8 434 aaPredicted RBP12.43□□□□□ -0.42
YBX3-216ENST00000544622 PAGE5Q96GU1 130 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 PLEKHA4Q9H4M7 779 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 ASB7Q9H672 318 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 TMEM206Q9H813 350 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 RPF1Q9H9Y2 349 aaKnown RBP12.43□□□□□ -0.42
YBX3-216ENST00000544622 SERTAD1Q9UHV2 236 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 CDH22Q9UJ99 828 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 UBQLN1Q9UMX0 589 aaKnown RBP12.43□□□□□ -0.42
YBX3-216ENST00000544622 EXOC7Q9UPT5 735 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 DERAQ9Y315 318 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 BACE2Q9Y5Z0 518 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 CITO14578 2027 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 VWA8A3KMH1 1905 aa12.43□□□□□ -0.42
YBX3-216ENST00000544622 A0A1W2PQ27 194 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 A0A1W2PQ64 194 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 A0A1W2PQD8 194 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 PI4K2BG5E9Z4 385 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 SYN3O14994 580 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 EIF3DO15371 548 aaKnown RBP eCLIP12.42□□□□□ -0.42
YBX3-216ENST00000544622 ADAM12O43184 909 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 KLRC4O43908 158 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 PRPF6O94906 941 aaKnown RBP12.42□□□□□ -0.42
YBX3-216ENST00000544622 GLUD1P00367 558 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 NUCB2P80303 420 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 PPP2R3AQ06190 1150 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 SLC8B1Q6J4K2 584 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 PDXDC1Q6P996 788 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 RSPO2Q6UXX9 243 aaPredicted RBP12.42□□□□□ -0.42
YBX3-216ENST00000544622 GPR149Q86SP6 731 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 CEP57Q86XR8 500 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 ZSWIM2Q8NEG5 633 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 POMGNT1Q8WZA1 660 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 KIF12Q96FN5 646 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 SUSD3Q96L08 255 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 NECTIN4Q96NY8 510 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 POP1Q99575 1024 aaKnown RBP12.42□□□□□ -0.42
YBX3-216ENST00000544622 APOL5Q9BWW9 433 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 BLZF1Q9H2G9 400 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 SFXN1Q9H9B4 322 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 MTRRQ9UBK8 725 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 DPP7Q9UHL4 492 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 USP25Q9UHP3 1055 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 C2CD2Q9Y426 696 aa12.42□□□□□ -0.42
YBX3-216ENST00000544622 ANO9A1A5B4 782 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 I3L4J1 428 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 M0QZQ0 153 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 PIRO00625 290 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 TGFB1I1O43294 461 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 LDHAP00338 332 aaKnown RBP12.41□□□□□ -0.42
YBX3-216ENST00000544622 TKTP29401 623 aaKnown RBP12.41□□□□□ -0.42
YBX3-216ENST00000544622 NDUFA8P51970 172 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 WNT7BP56706 349 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 ASIC1P78348 528 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 RAB33AQ14088 237 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 PDCD11Q14690 1871 aaKnown RBP12.41□□□□□ -0.42
YBX3-216ENST00000544622 PSMD5Q16401 504 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 BMT2Q1RMZ1 405 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 FAM26FQ5R3K3 315 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 RARS2Q5T160 578 aaKnown RBP12.41□□□□□ -0.42
YBX3-216ENST00000544622 JADE1Q6IE81 842 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 CES5AQ6NT32 575 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 TMC5Q6UXY8 1006 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 CYP26C1Q6V0L0 522 aa12.41□□□□□ -0.42
YBX3-216ENST00000544622 ANKS3Q6ZW76 656 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms