RNA–Protein interactions for RNA: ENST00000536782.2

TNFRSF1B-204, Transcript of TNF receptor superfamily member 1B, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1B, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1B-204ENST00000536782 KCNH3Q9ULD8 1083 aa21.54■■□□□ 1.04
TNFRSF1B-204ENST00000536782 SIT1Q9Y3P8 196 aa21.54■■□□□ 1.04
TNFRSF1B-204ENST00000536782 HARSP12081 509 aaKnown RBP21.53■■□□□ 1.04
TNFRSF1B-204ENST00000536782 RPL9P32969 192 aaKnown RBP21.53■■□□□ 1.04
TNFRSF1B-204ENST00000536782 SMTNP53814 917 aa21.53■■□□□ 1.04
TNFRSF1B-204ENST00000536782 ATP2C1P98194 919 aaPredicted RBP21.53■■□□□ 1.04
TNFRSF1B-204ENST00000536782 RAD51AP2Q09MP3 1159 aa21.53■■□□□ 1.04
TNFRSF1B-204ENST00000536782 SPECC1Q5M775 1068 aa21.53■■□□□ 1.04
TNFRSF1B-204ENST00000536782 HYIQ5T013 277 aa21.53■■□□□ 1.04
TNFRSF1B-204ENST00000536782 SLC8B1Q6J4K2 584 aa21.53■■□□□ 1.04
TNFRSF1B-204ENST00000536782 ZNF461Q8TAF7 563 aa21.53■■□□□ 1.04
TNFRSF1B-204ENST00000536782 SPIRE2Q8WWL2 714 aa21.53■■□□□ 1.04
TNFRSF1B-204ENST00000536782 SHDQ96IW2 340 aa21.53■■□□□ 1.04
TNFRSF1B-204ENST00000536782 NUB1Q9Y5A7 615 aa21.53■■□□□ 1.04
TNFRSF1B-204ENST00000536782 CACNA1AO00555 2505 aa21.53■■□□□ 1.04
TNFRSF1B-204ENST00000536782 MIA3Q5JRA6 1907 aa21.53■■□□□ 1.04
TNFRSF1B-204ENST00000536782 SYN3O14994 580 aa21.52■■□□□ 1.04
TNFRSF1B-204ENST00000536782 TOM1L1O75674 476 aa21.52■■□□□ 1.04
TNFRSF1B-204ENST00000536782 PLS3P13797 630 aa21.52■■□□□ 1.04
TNFRSF1B-204ENST00000536782 ELF1P32519 619 aa21.52■■□□□ 1.04
TNFRSF1B-204ENST00000536782 ROR1Q01973 937 aa21.52■■□□□ 1.04
TNFRSF1B-204ENST00000536782 VARS2Q5ST30 1063 aaKnown RBP21.52■■□□□ 1.04
TNFRSF1B-204ENST00000536782 SYT2Q8N9I0 419 aaPredicted RBP21.52■■□□□ 1.04
TNFRSF1B-204ENST00000536782 CDK5RAP3Q96JB5 506 aa21.52■■□□□ 1.04
TNFRSF1B-204ENST00000536782 ZBTB45Q96K62 511 aaPredicted RBP21.52■■□□□ 1.04
TNFRSF1B-204ENST00000536782 ANKFY1Q9P2R3 1169 aa21.52■■□□□ 1.04
TNFRSF1B-204ENST00000536782 MRPS23Q9Y3D9 190 aaKnown RBP21.52■■□□□ 1.04
TNFRSF1B-204ENST00000536782 COL4A3Q01955 1670 aa21.51■■□□□ 1.03
TNFRSF1B-204ENST00000536782 H7C4K7 107 aa21.51■■□□□ 1.03
TNFRSF1B-204ENST00000536782 ABLIM3O94929 683 aa21.51■■□□□ 1.03
TNFRSF1B-204ENST00000536782 LRG1P02750 347 aa21.51■■□□□ 1.03
TNFRSF1B-204ENST00000536782 DCNP07585 359 aaKnown RBP21.51■■□□□ 1.03
TNFRSF1B-204ENST00000536782 STARD6P59095 220 aa21.51■■□□□ 1.03
TNFRSF1B-204ENST00000536782 NPAS3Q8IXF0 933 aa21.51■■□□□ 1.03
TNFRSF1B-204ENST00000536782 TMEM161BQ8NDZ6 487 aa21.51■■□□□ 1.03
TNFRSF1B-204ENST00000536782 C18orf25Q96B23 403 aaPredicted RBP21.51■■□□□ 1.03
TNFRSF1B-204ENST00000536782 PNMA5Q96PV4 448 aa21.51■■□□□ 1.03
TNFRSF1B-204ENST00000536782 PLIN2Q99541 437 aa21.51■■□□□ 1.03
TNFRSF1B-204ENST00000536782 KCND2Q9NZV8 630 aa21.51■■□□□ 1.03
TNFRSF1B-204ENST00000536782 ARHGEF37A1IGU5 675 aa21.5■■□□□ 1.03
TNFRSF1B-204ENST00000536782 WDR27A2RRH5 827 aa21.5■■□□□ 1.03
TNFRSF1B-204ENST00000536782 VWA3AA6NCI4 1184 aa21.5■■□□□ 1.03
TNFRSF1B-204ENST00000536782 H3BQV1 296 aa21.5■■□□□ 1.03
TNFRSF1B-204ENST00000536782 PRRG1O14668 218 aa21.5■■□□□ 1.03
TNFRSF1B-204ENST00000536782 RHOP08100 348 aa21.5■■□□□ 1.03
TNFRSF1B-204ENST00000536782 MAPTP10636 758 aaKnown RBP21.5■■□□□ 1.03
TNFRSF1B-204ENST00000536782 PTPN2P17706 415 aa21.5■■□□□ 1.03
TNFRSF1B-204ENST00000536782 ARPP19P56211 112 aa21.5■■□□□ 1.03
TNFRSF1B-204ENST00000536782 NOLC1Q14978 699 aaKnown RBP eCLIP21.5■■□□□ 1.03
TNFRSF1B-204ENST00000536782 PJA1Q8NG27 643 aa21.5■■□□□ 1.03
TNFRSF1B-204ENST00000536782 ING5Q8WYH8 240 aa21.5■■□□□ 1.03
TNFRSF1B-204ENST00000536782 KXD1Q9BQD3 176 aa21.5■■□□□ 1.03
TNFRSF1B-204ENST00000536782 DLGAP2Q9P1A6 1054 aa21.5■■□□□ 1.03
TNFRSF1B-204ENST00000536782 CEP250Q9BV73 2442 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 CLDN3O15551 220 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 MEFVO15553 781 aaPredicted RBP21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 TBC1D4O60343 1298 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 PLA2G4BP0C869 781 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 ATF2P15336 505 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 MCM4P33991 863 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 SLC12A3P55017 1021 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 PFKPQ01813 784 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 SNW1Q13573 536 aaKnown RBP21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 MRPL58Q14197 206 aaKnown RBP21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 SLC10A6Q3KNW5 377 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 SEZ6Q53EL9 994 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 ARL6IP4Q66PJ3 421 aaKnown RBP21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 ZPBP2Q6X784 338 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 TCEAL8Q8IYN2 117 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 ADSSL1Q8N142 457 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 TMX3Q96JJ7 454 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 SUSD3Q96L08 255 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 FOXQ1Q9C009 403 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 AVENQ9NQS1 362 aaPredicted RBP21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 GDE1Q9NZC3 331 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 CITO14578 2027 aa21.49■■□□□ 1.03
TNFRSF1B-204ENST00000536782 GPR179Q6PRD1 2367 aa21.48■■□□□ 1.03
TNFRSF1B-204ENST00000536782 KANSL1LA0AUZ9 987 aa21.48■■□□□ 1.03
TNFRSF1B-204ENST00000536782 H0YCG3 227 aa21.48■■□□□ 1.03
TNFRSF1B-204ENST00000536782 GJB2P29033 226 aa21.48■■□□□ 1.03
TNFRSF1B-204ENST00000536782 MATR3P43243 847 aaKnown RBP eCLIP21.48■■□□□ 1.032e-7■□□□□ 10.4
TNFRSF1B-204ENST00000536782 PRKCQQ04759 706 aa21.48■■□□□ 1.03
TNFRSF1B-204ENST00000536782 MLF2Q15773 248 aaPredicted RBP21.48■■□□□ 1.03
TNFRSF1B-204ENST00000536782 SLC5A9Q2M3M2 681 aa21.48■■□□□ 1.03
TNFRSF1B-204ENST00000536782 CTXN3Q4LDR2 81 aa21.48■■□□□ 1.03
TNFRSF1B-204ENST00000536782 SLC44A4Q53GD3 710 aa21.48■■□□□ 1.03
TNFRSF1B-204ENST00000536782 C1orf210Q8IVY1 113 aa21.48■■□□□ 1.03
TNFRSF1B-204ENST00000536782 APPL2Q8NEU8 664 aa21.48■■□□□ 1.03
TNFRSF1B-204ENST00000536782 MCRS1Q96EZ8 462 aa21.48■■□□□ 1.03
TNFRSF1B-204ENST00000536782 SEMA4AQ9H3S1 761 aa21.48■■□□□ 1.03
TNFRSF1B-204ENST00000536782 CYP4F11Q9HBI6 524 aa21.48■■□□□ 1.03
TNFRSF1B-204ENST00000536782 LARSQ9P2J5 1176 aaKnown RBP21.48■■□□□ 1.03
TNFRSF1B-204ENST00000536782 FBXL5Q9UKA1 691 aa21.48■■□□□ 1.03
TNFRSF1B-204ENST00000536782 ECI2O75521 394 aa21.47■■□□□ 1.03
TNFRSF1B-204ENST00000536782 MCL1Q07820 350 aa21.47■■□□□ 1.03
TNFRSF1B-204ENST00000536782 TMEM119Q4V9L6 283 aa21.47■■□□□ 1.03
TNFRSF1B-204ENST00000536782 TPGS2Q68CL5 300 aa21.47■■□□□ 1.03
TNFRSF1B-204ENST00000536782 ZNF280DQ6N043 979 aa21.47■■□□□ 1.03
TNFRSF1B-204ENST00000536782 TBC1D32Q96NH3 1257 aa21.47■■□□□ 1.03
TNFRSF1B-204ENST00000536782 DDX23Q9BUQ8 820 aaKnown RBP21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms