RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 MUTYHQ9UIF7 546 aa22.45■■□□□ 1.18
VPS28-206ENST00000526734 PRR33A8MZF0 331 aa22.44■■□□□ 1.18
VPS28-206ENST00000526734 CITO14578 2027 aa22.44■■□□□ 1.18
VPS28-206ENST00000526734 LRPAP1P30533 357 aa22.44■■□□□ 1.18
VPS28-206ENST00000526734 ME1P48163 572 aa22.44■■□□□ 1.18
VPS28-206ENST00000526734 AXDND1Q5T1B0 1012 aaPredicted RBP22.44■■□□□ 1.18
VPS28-206ENST00000526734 L1TD1Q5T7N2 865 aaKnown RBP22.44■■□□□ 1.18
VPS28-206ENST00000526734 SLC39A4Q6P5W5 647 aa22.44■■□□□ 1.18
VPS28-206ENST00000526734 SHC4Q6S5L8 630 aa22.44■■□□□ 1.18
VPS28-206ENST00000526734 STXBP4Q6ZWJ1 553 aa22.44■■□□□ 1.18
VPS28-206ENST00000526734 RTL10Q7L3V2 364 aa22.44■■□□□ 1.18
VPS28-206ENST00000526734 SPRYD3Q8NCJ5 442 aa22.44■■□□□ 1.18
VPS28-206ENST00000526734 KREMEN2Q8NCW0 462 aa22.44■■□□□ 1.18
VPS28-206ENST00000526734 C18orf25Q96B23 403 aaPredicted RBP22.44■■□□□ 1.18
VPS28-206ENST00000526734 KIF12Q96FN5 646 aa22.44■■□□□ 1.18
VPS28-206ENST00000526734 CLSTN3Q9BQT9 956 aa22.44■■□□□ 1.18
VPS28-206ENST00000526734 PANK4Q9NVE7 773 aa22.44■■□□□ 1.18
VPS28-206ENST00000526734 FBXW11Q9UKB1 542 aa22.44■■□□□ 1.18
VPS28-206ENST00000526734 CPSF3Q9UKF6 684 aaKnown RBP22.44■■□□□ 1.18
VPS28-206ENST00000526734 DERAQ9Y315 318 aa22.44■■□□□ 1.18
VPS28-206ENST00000526734 CCDC195A0A1B0GUA6 201 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 GCNT3O95395 438 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 RPL17P18621 184 aaKnown RBP22.43■■□□□ 1.18
VPS28-206ENST00000526734 HOXA9P31269 272 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 TNFSF9P41273 254 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 PKP1Q13835 747 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 RAB33AQ14088 237 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 ZBTB6Q15916 424 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 ENOX2Q16206 610 aaKnown RBP22.43■■□□□ 1.18
VPS28-206ENST00000526734 LIN9Q5TKA1 542 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 ADALQ6DHV7 355 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 CNNM4Q6P4Q7 775 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 OTOP3Q7RTS5 596 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 ZDHHC14Q8IZN3 488 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 STAMQ92783 540 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 ACSF2Q96CM8 615 aaPredicted RBP22.43■■□□□ 1.18
VPS28-206ENST00000526734 SUSD3Q96L08 255 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 LRFN3Q9BTN0 628 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 ASB7Q9H672 318 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 TSHZ2Q9NRE2 1034 aa22.43■■□□□ 1.18
VPS28-206ENST00000526734 AGO2Q9UKV8 859 aaKnown RBP22.43■■□□□ 1.18
VPS28-206ENST00000526734 H7C4K7 107 aa22.42■■□□□ 1.18
VPS28-206ENST00000526734 ZMYND10O75800 440 aa22.42■■□□□ 1.18
VPS28-206ENST00000526734 HNRNPA1P09651 372 aaKnown RBP eCLIP22.42■■□□□ 1.18
VPS28-206ENST00000526734 WEE2P0C1S8 567 aa22.42■■□□□ 1.18
VPS28-206ENST00000526734 TKTP29401 623 aaKnown RBP22.42■■□□□ 1.18
VPS28-206ENST00000526734 BRCC3P46736 316 aa22.42■■□□□ 1.18
VPS28-206ENST00000526734 PTPN21Q16825 1174 aa22.42■■□□□ 1.18
VPS28-206ENST00000526734 GLYCTKQ8IVS8 523 aa22.42■■□□□ 1.18
VPS28-206ENST00000526734 APPL2Q8NEU8 664 aa22.42■■□□□ 1.18
VPS28-206ENST00000526734 EDAQ92838 391 aa22.42■■□□□ 1.18
VPS28-206ENST00000526734 DHX58Q96C10 678 aa22.42■■□□□ 1.18
VPS28-206ENST00000526734 TMEM206Q9H813 350 aa22.42■■□□□ 1.18
VPS28-206ENST00000526734 C11orf16Q9NQ32 467 aa22.42■■□□□ 1.18
VPS28-206ENST00000526734 TUBGCP4Q9UGJ1 667 aa22.42■■□□□ 1.18
VPS28-206ENST00000526734 CDH22Q9UJ99 828 aa22.42■■□□□ 1.18
VPS28-206ENST00000526734 RCOR1Q9UKL0 485 aa22.42■■□□□ 1.18
VPS28-206ENST00000526734 ATP6V1DQ9Y5K8 247 aa22.42■■□□□ 1.18
VPS28-206ENST00000526734 LACTBL1A8MY62 500 aa22.41■■□□□ 1.18
VPS28-206ENST00000526734 C2CD4DB7Z1M9 353 aa22.41■■□□□ 1.18
VPS28-206ENST00000526734 ANKRD63C9JTQ0 380 aa22.41■■□□□ 1.18
VPS28-206ENST00000526734 POU2F2P09086 479 aa22.41■■□□□ 1.18
VPS28-206ENST00000526734 MCM4P33991 863 aa22.41■■□□□ 1.18
VPS28-206ENST00000526734 DNM1Q05193 864 aaKnown RBP22.41■■□□□ 1.18
VPS28-206ENST00000526734 FOXD4L6Q3SYB3 417 aaPredicted RBP22.41■■□□□ 1.18
VPS28-206ENST00000526734 KANK3Q6NY19 840 aa22.41■■□□□ 1.18
VPS28-206ENST00000526734 FOXD4L3Q6VB84 417 aaPredicted RBP22.41■■□□□ 1.18
VPS28-206ENST00000526734 BEST2Q8NFU1 509 aa22.41■■□□□ 1.18
VPS28-206ENST00000526734 POMGNT1Q8WZA1 660 aa22.41■■□□□ 1.18
VPS28-206ENST00000526734 SMG7Q92540 1137 aaKnown RBP22.41■■□□□ 1.18
VPS28-206ENST00000526734 PRKD2Q9BZL6 878 aa22.41■■□□□ 1.18
VPS28-206ENST00000526734 TRIM9Q9C026 710 aa22.41■■□□□ 1.18
VPS28-206ENST00000526734 WDR6Q9NNW5 1121 aaKnown RBP22.41■■□□□ 1.18
VPS28-206ENST00000526734 PCDHA7Q9UN72 937 aa22.41■■□□□ 1.18
VPS28-206ENST00000526734 CLUHO75153 1309 aa22.4■■□□□ 1.18
VPS28-206ENST00000526734 LDHAP00338 332 aaKnown RBP22.4■■□□□ 1.18
VPS28-206ENST00000526734 OR1D2P34982 312 aa22.4■■□□□ 1.18
VPS28-206ENST00000526734 BECN1Q14457 450 aa22.4■■□□□ 1.18
VPS28-206ENST00000526734 UVSSAQ2YD98 709 aa22.4■■□□□ 1.18
VPS28-206ENST00000526734 ZBTB41Q5SVQ8 909 aa22.4■■□□□ 1.18
VPS28-206ENST00000526734 SPATA1Q5VX52 437 aa22.4■■□□□ 1.18
VPS28-206ENST00000526734 RESP18Q5W5W9 173 aa22.4■■□□□ 1.18
VPS28-206ENST00000526734 SLC8B1Q6J4K2 584 aa22.4■■□□□ 1.18
VPS28-206ENST00000526734 ZNF707Q96C28 371 aaPredicted RBP22.4■■□□□ 1.18
VPS28-206ENST00000526734 OXCT2Q9BYC2 517 aaPredicted RBP22.4■■□□□ 1.18
VPS28-206ENST00000526734 PIDD1Q9HB75 910 aa22.4■■□□□ 1.18
VPS28-206ENST00000526734 PCDHB8Q9UN66 801 aa22.4■■□□□ 1.18
VPS28-206ENST00000526734 C2CD2Q9Y426 696 aa22.4■■□□□ 1.18
VPS28-206ENST00000526734 PLXNA3P51805 1871 aa22.39■■□□□ 1.18
VPS28-206ENST00000526734 ARHGEF37A1IGU5 675 aa22.39■■□□□ 1.17
VPS28-206ENST00000526734 KIAA0391O15091 583 aaKnown RBP22.39■■□□□ 1.17
VPS28-206ENST00000526734 RFPL2O75678 378 aa22.39■■□□□ 1.17
VPS28-206ENST00000526734 IL18RAPO95256 599 aa22.39■■□□□ 1.17
VPS28-206ENST00000526734 SPATA31D3P0C874 917 aa22.39■■□□□ 1.17
VPS28-206ENST00000526734 GARTP22102 1010 aa22.39■■□□□ 1.17
VPS28-206ENST00000526734 KRT85P78386 507 aa22.39■■□□□ 1.17
VPS28-206ENST00000526734 ZXDAP98168 799 aa22.39■■□□□ 1.17
VPS28-206ENST00000526734 VARS2Q5ST30 1063 aaKnown RBP22.39■■□□□ 1.17
VPS28-206ENST00000526734 ZNF280DQ6N043 979 aa22.39■■□□□ 1.17
VPS28-206ENST00000526734 SPATA31D4Q6ZUB0 917 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms