RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 FAM126AQ9BYI3 521 aaPredicted RBP23.03■■□□□ 1.28
SQSTM1-210ENST00000506042 LTB4R2Q9NPC1 389 aa23.03■■□□□ 1.28
SQSTM1-210ENST00000506042 DNMT3BQ9UBC3 853 aaKnown RBP23.03■■□□□ 1.28
SQSTM1-210ENST00000506042 ARHGEF37A1IGU5 675 aa23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 TTLL13PA6NNM8 815 aa23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 XPOTO43592 962 aaKnown RBP23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 ATF2P15336 505 aa23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 NRLP54845 237 aa23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 VARS2Q5ST30 1063 aaKnown RBP23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 NT5DC1Q5TFE4 455 aa23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 MPZL3Q6UWV2 235 aa23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 TPRG1Q6ZUI0 275 aa23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 DGLUCYQ7Z3D6 616 aa23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 ING5Q8WYH8 240 aa23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 IRF7Q92985 503 aa23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 ZNF512Q96ME7 567 aaPredicted RBP23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 ACO2Q99798 780 aaKnown RBP23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 BRD9Q9H8M2 597 aa23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 CYP4F11Q9HBI6 524 aa23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 ZFP14Q9HCL3 533 aa23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 PPP4R2Q9NY27 417 aa23.02■■□□□ 1.28
SQSTM1-210ENST00000506042 ADAM12O43184 909 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 SCP2P22307 547 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 MCM4P33991 863 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 MATR3P43243 847 aaKnown RBP eCLIP23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 RPS9P46781 194 aaKnown RBP23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 NPTX2P47972 431 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 ARPP19P56211 112 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 ROR1Q01973 937 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 PLD1Q13393 1074 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 KYAT1Q16773 422 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 CTXN3Q4LDR2 81 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 C1orf228Q6PIY5 440 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 DTHD1Q6ZMT9 781 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 TCEAL8Q8IYN2 117 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 E2F7Q96AV8 911 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 MCRS1Q96EZ8 462 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 CDK5RAP3Q96JB5 506 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 GPR88Q9GZN0 384 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 CDT1Q9H211 546 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 HCFC1R1Q9NWW0 138 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 RAB23Q9ULC3 237 aa23.01■■□□□ 1.27
SQSTM1-210ENST00000506042 VWA8A3KMH1 1905 aa23■■□□□ 1.27
SQSTM1-210ENST00000506042 KCNE1P15382 129 aa23■■□□□ 1.27
SQSTM1-210ENST00000506042 PRPHP41219 470 aa23■■□□□ 1.27
SQSTM1-210ENST00000506042 OSTNP61366 133 aa23■■□□□ 1.27
SQSTM1-210ENST00000506042 CSTF1Q05048 431 aaKnown RBP23■■□□□ 1.27
SQSTM1-210ENST00000506042 ERICH6BQ5W0A0 696 aa23■■□□□ 1.27
SQSTM1-210ENST00000506042 IGSF22Q8N9C0 903 aa23■■□□□ 1.27
SQSTM1-210ENST00000506042 CORO1BQ9BR76 489 aa23■■□□□ 1.27
SQSTM1-210ENST00000506042 RPP25Q9BUL9 199 aaKnown RBP23■■□□□ 1.27
SQSTM1-210ENST00000506042 TRMT61BQ9BVS5 477 aaKnown RBP23■■□□□ 1.27
SQSTM1-210ENST00000506042 ZSCAN32Q9NX65 697 aa23■■□□□ 1.27
SQSTM1-210ENST00000506042 RIF1Q5UIP0 2472 aaKnown RBP22.99■■□□□ 1.27
SQSTM1-210ENST00000506042 HIP1RO75146 1068 aa22.99■■□□□ 1.27
SQSTM1-210ENST00000506042 ABLIM3O94929 683 aa22.99■■□□□ 1.27
SQSTM1-210ENST00000506042 CPB1P15086 417 aa22.99■■□□□ 1.27
SQSTM1-210ENST00000506042 BRCC3P46736 316 aa22.99■■□□□ 1.27
SQSTM1-210ENST00000506042 ADCY1Q08828 1119 aa22.99■■□□□ 1.27
SQSTM1-210ENST00000506042 PTGDRQ13258 359 aa22.99■■□□□ 1.27
SQSTM1-210ENST00000506042 XKR4Q5GH76 650 aa22.99■■□□□ 1.27
SQSTM1-210ENST00000506042 DEPDC1BQ8WUY9 529 aa22.99■■□□□ 1.27
SQSTM1-210ENST00000506042 GOLGA2P5Q9HBQ8 144 aa22.99■■□□□ 1.27
SQSTM1-210ENST00000506042 KCND2Q9NZV8 630 aa22.99■■□□□ 1.27
SQSTM1-210ENST00000506042 CNTN3Q9P232 1028 aa22.99■■□□□ 1.27
SQSTM1-210ENST00000506042 ARHGAP28Q9P2N2 729 aa22.99■■□□□ 1.27
SQSTM1-210ENST00000506042 INSL5Q9Y5Q6 135 aa22.99■■□□□ 1.27
SQSTM1-210ENST00000506042 TOM1L1O75674 476 aa22.98■■□□□ 1.27
SQSTM1-210ENST00000506042 NOLC1Q14978 699 aaKnown RBP eCLIP22.98■■□□□ 1.27
SQSTM1-210ENST00000506042 USP37Q86T82 979 aa22.98■■□□□ 1.27
SQSTM1-210ENST00000506042 ST13P5Q8NFI4 369 aaPredicted RBP22.98■■□□□ 1.27
SQSTM1-210ENST00000506042 MSANTD3Q96H12 275 aa22.98■■□□□ 1.27
SQSTM1-210ENST00000506042 ASAH2Q9NR71 780 aa22.98■■□□□ 1.27
SQSTM1-210ENST00000506042 LARSQ9P2J5 1176 aaKnown RBP22.98■■□□□ 1.27
SQSTM1-210ENST00000506042 USP20Q9Y2K6 914 aa22.98■■□□□ 1.27
SQSTM1-210ENST00000506042 CFAP54Q96N23 3096 aa22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 I3L4J1 428 aa22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 CLDN3O15551 220 aa22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 HARSP12081 509 aaKnown RBP22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 PAX3P23760 479 aa22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 ABCD1P33897 745 aa22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 ALKAL1Q6UXT8 129 aa22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 YAF2Q8IY57 180 aa22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 BICD1Q96G01 975 aa22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 SUSD3Q96L08 255 aa22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 TSPAN18Q96SJ8 248 aa22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 TARS2Q9BW92 718 aaKnown RBP22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 PLEKHA5Q9HAU0 1116 aa22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 ANKFY1Q9P2R3 1169 aa22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 AFF4Q9UHB7 1163 aaKnown RBP22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 GMEB2Q9UKD1 530 aa22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 CITO14578 2027 aa22.97■■□□□ 1.27
SQSTM1-210ENST00000506042 FANCMQ8IYD8 2048 aa22.96■■□□□ 1.27
SQSTM1-210ENST00000506042 WDR27A2RRH5 827 aa22.96■■□□□ 1.27
SQSTM1-210ENST00000506042 TBC1D4O60343 1298 aa22.96■■□□□ 1.27
SQSTM1-210ENST00000506042 GLULP15104 373 aa22.96■■□□□ 1.27
SQSTM1-210ENST00000506042 GUCY2CP25092 1073 aa22.96■■□□□ 1.27
SQSTM1-210ENST00000506042 ZPBP2Q6X784 338 aa22.96■■□□□ 1.27
SQSTM1-210ENST00000506042 SPIRE2Q8WWL2 714 aa22.96■■□□□ 1.27
SQSTM1-210ENST00000506042 CLDN23Q96B33 292 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms