RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Slc1a1P51906 523 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Clec4gQ8BNX1 294 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Eif3hQ91WK2 352 aaKnown RBP16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Thumpd2Q9CZB3 528 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Rnf4Q9QZS2 194 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 PapolbQ9WVP6 641 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Guca2bO09051 106 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Map4k1P70218 827 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Rasgrf2P70392 1189 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Tcf12Q61286 706 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Usp8Q80U87 1080 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Fndc3aQ8BX90 1198 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Gpc5Q8CAL5 572 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 ParvaQ9EPC1 372 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Als2Q920R0 1651 aa16.41■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Mtco1P00397 514 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Klhl38Q8BSF5 581 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Rfx6Q8C7R7 927 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Sash3Q8K352 380 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Gps1Q99LD4 471 aaKnown RBP16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Elp3Q9CZX0 547 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Trpc5Q9QX29 975 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 CtsfQ9R013 462 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Zscan4-ps3A0A1B0GRH6 506 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Zscan4-ps2A0A1C7CYU6 506 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 A630010A05RikA9C473 232 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Ttc17E9PVB5 1198 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Akr1b10G5E895 316 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Il2P04351 169 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Thumpd3P97770 505 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Apba2P98084 750 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Jade1Q6ZPI0 834 aaKnown RBP16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Phka2Q8BWJ3 1235 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Btbd6Q8K2J9 488 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Tti1Q91V83 1085 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Bco2Q99NF1 532 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Prg3Q9JL95 222 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Bend4P86174 541 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Atp9bP98195 1146 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Sec23ipQ6NZC7 998 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Txnrd3Q99MD6 652 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 PlekQ9JHK5 350 aaKnown RBP16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Adrm1Q9JKV1 407 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Gm15448F6PZL4 682 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Hnrnph1O35737 449 aaKnown RBP16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Kcnu1O54982 1121 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 SnrpfP62307 86 aaKnown RBP16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Prmt9Q3U3W5 846 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Gm4981Q3ULJ8 291 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Ppp4r3cQ3V0Y1 813 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Foxp3Q99JB6 429 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Mrps9Q9D7N3 390 aaKnown RBP16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Ascc1Q9D8Z1 356 aaKnown RBP16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 IkbipQ9DBZ1 373 aa16.4■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Meis2P97367 477 aa16.39■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Ptgs2Q05769 604 aa16.39■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Krt32Q62168 407 aa16.39■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Agap1Q8BXK8 857 aaKnown RBP16.39■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Inpp5fQ8CDA1 1132 aa16.39■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Pdk2Q9JK42 407 aa16.39■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Arhgap4B1AUY3 965 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Crnkl1P63154 690 aaKnown RBP16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Sema4bQ62179 823 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Prl7b1Q8CGZ9 251 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Krt10P02535 570 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Vcam1P29533 739 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Pdha1P35486 390 aaKnown RBP16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Dnajc8Q6NZB0 253 aaKnown RBP16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Daam1Q8BPM0 1077 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Ccdc80Q8R2G6 949 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Syf2Q9D198 242 aaKnown RBP16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Crlf3Q9Z2L7 442 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Cdr2lA2A6T1 465 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Gm13084A2A8N0 494 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 C1qbpO35658 278 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 rp9P97762 213 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Col6a1Q04857 1025 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 SpoplQ2M2N2 392 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Klhdc9Q3USL1 350 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Tmem145Q8C4U2 746 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Nrbf2Q8VCQ3 287 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Nudt12Q9DCN1 462 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Rabgef1Q9JM13 491 aa16.39■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Tcp11x2A2AEI7 503 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Usp17ldG5E8G2 545 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Usp17lcG5E8I7 545 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Alkbh1P0CB42 389 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Wee1P47810 646 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Cav1P49817 178 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Sox10Q04888 466 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Ccdc138Q0VF22 680 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Cdca2Q14B71 982 aaKnown RBP16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Npdc1Q64322 332 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Rnf139Q7TMV1 668 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Olfr1415Q7TQS4 311 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Pgm5Q8BZF8 567 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Olfr1416Q8VGU4 312 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Ccdc97Q9DBT3 340 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Magea10A2AMW4 325 aa16.38■□□□□ 0.21
Ccdc88b-201ENSMUST00000113440 Irf8P23611 424 aa16.38■□□□□ 0.21
Retrieved 100 of 22,080 RNA–protein pairs in 18.6 ms