Protein–RNA interactions for Protein: Q8C7R7

Rfx6, DNA-binding protein RFX6, mousemouse

Predictions only

Length 927 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx6Q8C7R7 Gm25239-201ENSMUST00000174915 86 ntBASIC35.62■■■■□ 3.29
Rfx6Q8C7R7 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
Rfx6Q8C7R7 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC33.86■■■■□ 3.01
Rfx6Q8C7R7 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC33.78■■■■□ 3
Rfx6Q8C7R7 Psd-208ENSMUST00000224556 2034 ntBASIC32.67■■■□□ 2.82
Rfx6Q8C7R7 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
Rfx6Q8C7R7 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
Rfx6Q8C7R7 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC32.21■■■□□ 2.75
Rfx6Q8C7R7 Gm15042-201ENSMUST00000120212 883 ntBASIC31.93■■■□□ 2.7
Rfx6Q8C7R7 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC31.88■■■□□ 2.69
Rfx6Q8C7R7 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
Rfx6Q8C7R7 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
Rfx6Q8C7R7 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Rfx6Q8C7R7 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC31.39■■■□□ 2.62
Rfx6Q8C7R7 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Rfx6Q8C7R7 Gm15045-201ENSMUST00000117359 883 ntBASIC31.35■■■□□ 2.61
Rfx6Q8C7R7 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Rfx6Q8C7R7 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
Rfx6Q8C7R7 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
Rfx6Q8C7R7 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Rfx6Q8C7R7 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
Rfx6Q8C7R7 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC30.61■■■□□ 2.49
Rfx6Q8C7R7 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
Rfx6Q8C7R7 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
Rfx6Q8C7R7 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
Rfx6Q8C7R7 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
Rfx6Q8C7R7 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC30.5■■■□□ 2.47
Rfx6Q8C7R7 Gm24109-201ENSMUST00000175489 103 ntBASIC30.49■■■□□ 2.47
Rfx6Q8C7R7 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC30.45■■■□□ 2.46
Rfx6Q8C7R7 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
Rfx6Q8C7R7 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Rfx6Q8C7R7 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC30.26■■■□□ 2.44
Rfx6Q8C7R7 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
Rfx6Q8C7R7 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
Rfx6Q8C7R7 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC30.04■■■□□ 2.4
Rfx6Q8C7R7 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.02■■■□□ 2.4
Rfx6Q8C7R7 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC29.98■■■□□ 2.39
Rfx6Q8C7R7 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
Rfx6Q8C7R7 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC29.92■■■□□ 2.38
Rfx6Q8C7R7 Gm23366-201ENSMUST00000175022 89 ntBASIC29.86■■■□□ 2.37
Rfx6Q8C7R7 Gm10524-201ENSMUST00000181931 1893 ntBASIC29.74■■■□□ 2.35
Rfx6Q8C7R7 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC29.73■■■□□ 2.35
Rfx6Q8C7R7 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
Rfx6Q8C7R7 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
Rfx6Q8C7R7 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
Rfx6Q8C7R7 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Rfx6Q8C7R7 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
Rfx6Q8C7R7 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
Rfx6Q8C7R7 AC153911.1-202ENSMUST00000218534 1034 ntBASIC29.36■■■□□ 2.29
Rfx6Q8C7R7 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
Rfx6Q8C7R7 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC29.31■■■□□ 2.28
Rfx6Q8C7R7 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Rfx6Q8C7R7 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC29.29■■■□□ 2.28
Rfx6Q8C7R7 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
Rfx6Q8C7R7 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Rfx6Q8C7R7 CT025624.2-201ENSMUST00000223609 1909 ntBASIC28.98■■■□□ 2.23
Rfx6Q8C7R7 Gm42596-201ENSMUST00000196305 1958 ntBASIC28.95■■■□□ 2.23
Rfx6Q8C7R7 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC28.95■■■□□ 2.23
Rfx6Q8C7R7 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Rfx6Q8C7R7 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
Rfx6Q8C7R7 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC28.85■■■□□ 2.21
Rfx6Q8C7R7 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Rfx6Q8C7R7 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Rfx6Q8C7R7 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC28.82■■■□□ 2.2
Rfx6Q8C7R7 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
Rfx6Q8C7R7 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Rfx6Q8C7R7 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC28.79■■■□□ 2.2
Rfx6Q8C7R7 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC28.7■■■□□ 2.18
Rfx6Q8C7R7 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC28.69■■■□□ 2.18
Rfx6Q8C7R7 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC28.64■■■□□ 2.18
Rfx6Q8C7R7 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC28.57■■■□□ 2.16
Rfx6Q8C7R7 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Rfx6Q8C7R7 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
Rfx6Q8C7R7 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
Rfx6Q8C7R7 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
Rfx6Q8C7R7 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Rfx6Q8C7R7 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC28.31■■■□□ 2.12
Rfx6Q8C7R7 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
Rfx6Q8C7R7 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Rfx6Q8C7R7 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
Rfx6Q8C7R7 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
Rfx6Q8C7R7 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC28.16■■■□□ 2.1
Rfx6Q8C7R7 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC28.14■■■□□ 2.1
Rfx6Q8C7R7 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
Rfx6Q8C7R7 Gm27325-201ENSMUST00000175467 74 ntBASIC28.12■■■□□ 2.09
Rfx6Q8C7R7 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC28.12■■■□□ 2.09
Rfx6Q8C7R7 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Rfx6Q8C7R7 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Rfx6Q8C7R7 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Rfx6Q8C7R7 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
Rfx6Q8C7R7 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Rfx6Q8C7R7 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Rfx6Q8C7R7 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC28.02■■■□□ 2.08
Rfx6Q8C7R7 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Rfx6Q8C7R7 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Rfx6Q8C7R7 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Rfx6Q8C7R7 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC27.92■■■□□ 2.06
Rfx6Q8C7R7 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Rfx6Q8C7R7 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC27.85■■■□□ 2.05
Rfx6Q8C7R7 Gm25238-201ENSMUST00000174914 89 ntBASIC27.85■■■□□ 2.05
Retrieved 100 of 76,532 protein–RNA pairs in 12.8 ms