RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Farp1F8VPU2 1048 aa12.52□□□□□ -0.41
Trim56-201ENSMUST00000054384 Tfe3Q64092 572 aaKnown RBP12.52□□□□□ -0.41
Trim56-201ENSMUST00000054384 Tfdp2Q64163 446 aa12.52□□□□□ -0.41
Trim56-201ENSMUST00000054384 Rbbp8Q80YR6 893 aa12.52□□□□□ -0.41
Trim56-201ENSMUST00000054384 Adgrl3Q80TS3 1537 aa12.52□□□□□ -0.41
Trim56-201ENSMUST00000054384 Vmn2r71L7N2D8 855 aa12.52□□□□□ -0.41
Trim56-201ENSMUST00000054384 PreplQ8C167 725 aa12.52□□□□□ -0.41
Trim56-201ENSMUST00000054384 Pkp3Q9QY23 797 aa12.52□□□□□ -0.41
Trim56-201ENSMUST00000054384 Arhgef37A1IGU4 676 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 SprtnG3X912 497 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Mark3Q03141 753 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Ccna1Q61456 421 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Zfp317Q8C0Q5 607 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Rnf123Q5XPI3 1314 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Abca16E9PWJ7 1678 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Cdk12Q14AX6 1484 aaKnown RBP12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Trappc11B2RXC1 1133 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Zfp266E9Q2S7 604 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Tpp1O89023 562 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 P01734 135 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 PolgP54099 1218 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Serpinb6dQ3UWK8 375 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Abraxas1Q8BPZ8 407 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Zmynd10Q99ML0 440 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Hoxc10P31257 342 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Tlr11Q6R5P0 926 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Tekt4Q149S1 447 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Tmem232Q5K6N0 675 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Slc5a4aQ9ET37 656 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Ctnnd2O35927 1247 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 CcnoP0C242 352 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Cdh15P33146 784 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Ccna2P51943 422 aaKnown RBP12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Scnn1aQ61180 699 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Fam167aQ6P1G6 215 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Mapk4Q6P5G0 583 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Prrg3Q6PAQ9 231 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 ThtpaQ8JZL3 224 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 HpdlQ8K248 371 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Ccdc137Q8R0K4 290 aaKnown RBP12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Chchd6Q91VN4 273 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Mageb3Q9D2H4 330 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Sema3fO88632 785 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Rps6P62754 249 aaKnown RBP12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Dsg1aQ61495 1057 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Man1c1Q6NXK9 625 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Trim31Q8R0K2 507 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 RalbQ9JIW9 206 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gja10Q9WUS4 505 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Atp8b5A3FIN4 1183 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm9992B2RWK3 458 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gabpb1Q00420 383 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Apoa1Q00623 264 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Q14AM7 275 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Vwa3aQ3UVV9 1148 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 ItgaeQ60677 1167 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Unc93aQ710D3 458 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Trim56Q80VI1 734 aaKnown RBP12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Slc44a2Q8BY89 706 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Ago2Q8CJG0 860 aaKnown RBP12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Stk33Q924X7 491 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 GgcxQ9QYC7 757 aa12.51□□□□□ -0.41
Trim56-201ENSMUST00000054384 Ankzf1Q80UU1 748 aaKnown RBP12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Smyd2Q8R5A0 433 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Nup50Q9JIH2 466 aaKnown RBP12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm2832F7AEC7 200 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Eif3hQ91WK2 352 aaKnown RBP12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Ankfn1A0A140LIW7 1083 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Cdh18E9Q9Q6 790 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm3424L7N298 263 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm8246M0QWX9 263 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 MyocO70624 490 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 InscQ3HNM7 579 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 9130409I23RikQ3TS87 320 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Fam169aQ5XG69 665 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Q6GQU0 248 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Abcf2Q99LE6 628 aaKnown RBP12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 IcoslgQ9JHJ8 322 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gm21497A0A087WRK3 222 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Map7d3A2AEY4 876 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Slc27a6E9Q9W4 619 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Spata31E9QAF0 1014 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Cd180Q62192 661 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Actl9Q8CG27 415 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Rbmx2Q8R0F5 326 aaKnown RBP12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Ddah1Q9CWS0 285 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Gmeb1Q9JL60 562 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Rasgrp1Q9Z1S3 795 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Zfp882E9Q4R4 555 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Ifi206G3UZV2 921 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Chil3O35744 398 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 GabrdP22933 449 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 ClmnQ8C5W0 1052 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Tph2Q8CGV2 488 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Serpina3nQ91WP6 418 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Slxl1Q9D515 155 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 ArcQ9WV31 396 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 S100a13P97352 98 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Atp4aQ64436 1033 aa12.5□□□□□ -0.41
Trim56-201ENSMUST00000054384 Chn1Q91V57 459 aa12.5□□□□□ -0.41
Retrieved 100 of 22,080 RNA–protein pairs in 36.7 ms