Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm25239-201ENSMUST00000174915 86 ntBASIC44.96■■■■■ 4.79
Trim56Q80VI1 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC41.42■■■■■ 4.22
Trim56Q80VI1 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC40.81■■■■■ 4.12
Trim56Q80VI1 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC40.54■■■■■ 4.08
Trim56Q80VI1 Gm15042-201ENSMUST00000120212 883 ntBASIC39.57■■■■□ 3.93
Trim56Q80VI1 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC39.56■■■■□ 3.92
Trim56Q80VI1 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC39.13■■■■□ 3.86
Trim56Q80VI1 Gm24109-201ENSMUST00000175489 103 ntBASIC38.87■■■■□ 3.81
Trim56Q80VI1 Gm15045-201ENSMUST00000117359 883 ntBASIC38.83■■■■□ 3.81
Trim56Q80VI1 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
Trim56Q80VI1 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC37.96■■■■□ 3.67
Trim56Q80VI1 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC37.91■■■■□ 3.66
Trim56Q80VI1 Psd-208ENSMUST00000224556 2034 ntBASIC37.53■■■■□ 3.6
Trim56Q80VI1 Gm23366-201ENSMUST00000175022 89 ntBASIC37.51■■■■□ 3.6
Trim56Q80VI1 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC37.45■■■■□ 3.59
Trim56Q80VI1 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC37.42■■■■□ 3.58
Trim56Q80VI1 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC37.35■■■■□ 3.57
Trim56Q80VI1 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC37.12■■■■□ 3.53
Trim56Q80VI1 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC37.06■■■■□ 3.52
Trim56Q80VI1 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC37.01■■■■□ 3.51
Trim56Q80VI1 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC36.95■■■■□ 3.51
Trim56Q80VI1 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
Trim56Q80VI1 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC36.83■■■■□ 3.49
Trim56Q80VI1 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC36.7■■■■□ 3.47
Trim56Q80VI1 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC36.55■■■■□ 3.44
Trim56Q80VI1 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC36.54■■■■□ 3.44
Trim56Q80VI1 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC36.53■■■■□ 3.44
Trim56Q80VI1 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC36.44■■■■□ 3.42
Trim56Q80VI1 AC153911.1-202ENSMUST00000218534 1034 ntBASIC36.33■■■■□ 3.41
Trim56Q80VI1 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC36.21■■■■□ 3.39
Trim56Q80VI1 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.39
Trim56Q80VI1 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC36.05■■■■□ 3.36
Trim56Q80VI1 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC35.99■■■■□ 3.35
Trim56Q80VI1 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC35.98■■■■□ 3.35
Trim56Q80VI1 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC35.87■■■■□ 3.33
Trim56Q80VI1 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC35.57■■■■□ 3.28
Trim56Q80VI1 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
Trim56Q80VI1 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
Trim56Q80VI1 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC35.48■■■■□ 3.27
Trim56Q80VI1 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC35.43■■■■□ 3.26
Trim56Q80VI1 Gm25238-201ENSMUST00000174914 89 ntBASIC35.42■■■■□ 3.26
Trim56Q80VI1 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
Trim56Q80VI1 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
Trim56Q80VI1 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
Trim56Q80VI1 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC35.27■■■■□ 3.24
Trim56Q80VI1 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC35.26■■■■□ 3.24
Trim56Q80VI1 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC35.22■■■■□ 3.23
Trim56Q80VI1 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.22
Trim56Q80VI1 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC35.12■■■■□ 3.21
Trim56Q80VI1 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
Trim56Q80VI1 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
Trim56Q80VI1 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
Trim56Q80VI1 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC34.86■■■■□ 3.17
Trim56Q80VI1 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
Trim56Q80VI1 Gm27325-201ENSMUST00000175467 74 ntBASIC34.76■■■■□ 3.16
Trim56Q80VI1 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
Trim56Q80VI1 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC34.7■■■■□ 3.15
Trim56Q80VI1 Gm10524-201ENSMUST00000181931 1893 ntBASIC34.65■■■■□ 3.14
Trim56Q80VI1 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC34.64■■■■□ 3.14
Trim56Q80VI1 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
Trim56Q80VI1 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.12
Trim56Q80VI1 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC34.49■■■■□ 3.11
Trim56Q80VI1 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC34.43■■■■□ 3.1
Trim56Q80VI1 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
Trim56Q80VI1 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC34.38■■■■□ 3.09
Trim56Q80VI1 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC34.3■■■■□ 3.08
Trim56Q80VI1 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
Trim56Q80VI1 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC34.27■■■■□ 3.08
Trim56Q80VI1 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC34.26■■■■□ 3.08
Trim56Q80VI1 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC34.22■■■■□ 3.07
Trim56Q80VI1 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC34.22■■■■□ 3.07
Trim56Q80VI1 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC34.21■■■■□ 3.07
Trim56Q80VI1 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.06
Trim56Q80VI1 CT025624.2-201ENSMUST00000223609 1909 ntBASIC34.18■■■■□ 3.06
Trim56Q80VI1 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC34.16■■■■□ 3.06
Trim56Q80VI1 Gm42596-201ENSMUST00000196305 1958 ntBASIC34.14■■■■□ 3.06
Trim56Q80VI1 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC34.07■■■■□ 3.05
Trim56Q80VI1 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC34.04■■■■□ 3.04
Trim56Q80VI1 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC34.01■■■■□ 3.04
Trim56Q80VI1 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC33.91■■■■□ 3.02
Trim56Q80VI1 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
Trim56Q80VI1 Rab21-202ENSMUST00000218831 843 ntBASIC33.88■■■■□ 3.01
Trim56Q80VI1 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
Trim56Q80VI1 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC33.85■■■■□ 3.01
Trim56Q80VI1 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC33.76■■■■□ 3
Trim56Q80VI1 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC33.72■■■□□ 2.99
Trim56Q80VI1 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC33.68■■■□□ 2.98
Trim56Q80VI1 Gm25262-201ENSMUST00000174934 133 ntBASIC33.65■■■□□ 2.98
Trim56Q80VI1 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC33.62■■■□□ 2.97
Trim56Q80VI1 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC33.55■■■□□ 2.96
Trim56Q80VI1 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC33.54■■■□□ 2.96
Trim56Q80VI1 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC33.53■■■□□ 2.96
Trim56Q80VI1 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC33.45■■■□□ 2.94
Trim56Q80VI1 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
Trim56Q80VI1 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC33.42■■■□□ 2.94
Trim56Q80VI1 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
Trim56Q80VI1 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
Trim56Q80VI1 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
Trim56Q80VI1 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
Trim56Q80VI1 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
Retrieved 100 of 76,532 protein–RNA pairs in 10.8 ms