RNA–Protein interactions for RNA: YOR339C

UBC11, Transcript of Ubiquitin-conjugating enzyme, yeast

Gene UBC11, Length 471 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC11	YOR339C	RPS23A	P0CX29	145 aa	Known RBP	4.98	□□□□□ -1.61
UBC11	YOR339C	RPS23B	P0CX30	145 aa		4.98	□□□□□ -1.61
UBC11	YOR339C	PET54	P10834	293 aa		4.98	□□□□□ -1.61
UBC11	YOR339C	RPL3	P14126	387 aa	Known RBP	4.98	□□□□□ -1.61
UBC11	YOR339C	URA6	P15700	204 aa		4.98	□□□□□ -1.61
UBC11	YOR339C	DAL80	P26343	269 aa		4.98	□□□□□ -1.61
UBC11	YOR339C	RNP1	P32385	249 aa		4.98	□□□□□ -1.61
UBC11	YOR339C	YKL187C	P34231	750 aa		4.98	□□□□□ -1.61
UBC11	YOR339C	MRPL36	P36531	177 aa		4.98	□□□□□ -1.61
UBC11	YOR339C	GAT2	P40209	560 aa		4.98	□□□□□ -1.61
UBC11	YOR339C	YKE4	P40544	346 aa		4.98	□□□□□ -1.61
UBC11	YOR339C	EGT2	P42835	1041 aa		4.98	□□□□□ -1.61
UBC11	YOR339C	SSN8	P47821	323 aa		4.98	□□□□□ -1.61
UBC11	YOR339C	UFD1	P53044	361 aa		4.98	□□□□□ -1.61
UBC11	YOR339C	ARO8	P53090	500 aa	Known RBP	4.98	□□□□□ -1.61
UBC11	YOR339C	SED1	Q01589	338 aa		4.98	□□□□□ -1.61
UBC11	YOR339C	YDC1	Q02896	317 aa		4.98	□□□□□ -1.61
UBC11	YOR339C	UTP15	Q04305	513 aa	Known RBP	4.98	□□□□□ -1.61
UBC11	YOR339C	HNT1	Q04344	158 aa	Known RBP	4.98	□□□□□ -1.61
UBC11	YOR339C	YLR031W	Q07978	186 aa		4.98	□□□□□ -1.61
UBC11	YOR339C	TDH2	P00358	332 aa	Known RBP	4.97	□□□□□ -1.61
UBC11	YOR339C	RPL25	P04456	142 aa	Known RBP	4.97	□□□□□ -1.61
UBC11	YOR339C	GCD1	P09032	578 aa	Predicted RBP	4.97	□□□□□ -1.61
UBC11	YOR339C	RFA1	P22336	621 aa	Known RBP	4.97	□□□□□ -1.61
UBC11	YOR339C	YCP4	P25349	247 aa	Known RBP	4.97	□□□□□ -1.61
UBC11	YOR339C	RFA3	P26755	122 aa	Known RBP	4.97	□□□□□ -1.61
UBC11	YOR339C	AGA2	P32781	87 aa		4.97	□□□□□ -1.61
UBC11	YOR339C	SPC29	P33419	253 aa		4.97	□□□□□ -1.61
UBC11	YOR339C	YKL107W	P34251	309 aa		4.97	□□□□□ -1.61
UBC11	YOR339C	ECM14	P38836	430 aa		4.97	□□□□□ -1.61
UBC11	YOR339C	QRI1	P43123	477 aa	Known RBP	4.97	□□□□□ -1.61
UBC11	YOR339C	AIM25	P47140	327 aa		4.97	□□□□□ -1.61
UBC11	YOR339C	MSE1	P48525	536 aa		4.97	□□□□□ -1.61
UBC11	YOR339C	YDR248C	Q03786	193 aa		4.97	□□□□□ -1.61
UBC11	YOR339C	TY1A-MR1	Q04215	440 aa		4.97	□□□□□ -1.61
UBC11	YOR339C	ENV7	Q12003	364 aa		4.97	□□□□□ -1.61
UBC11	YOR339C	EAF3	Q12432	401 aa		4.97	□□□□□ -1.61
UBC11	YOR339C	RPS31	P05759	152 aa	Known RBP	4.96	□□□□□ -1.62
UBC11	YOR339C	SPS2	P08459	502 aa		4.96	□□□□□ -1.62
UBC11	YOR339C	CDC34	P14682	295 aa		4.96	□□□□□ -1.62
UBC11	YOR339C	MSS1	P32559	526 aa	Predicted RBP	4.96	□□□□□ -1.62
UBC11	YOR339C	RIB7	P33312	244 aa		4.96	□□□□□ -1.62
UBC11	YOR339C	SEC66	P33754	206 aa		4.96	□□□□□ -1.62
UBC11	YOR339C	SHM2	P37291	469 aa	Known RBP	4.96	□□□□□ -1.62
UBC11	YOR339C	FIG1	P38224	298 aa		4.96	□□□□□ -1.62
UBC11	YOR339C	AIM20	P40451	204 aa		4.96	□□□□□ -1.62
UBC11	YOR339C	GNA1	P43577	159 aa	Predicted RBP	4.96	□□□□□ -1.62
UBC11	YOR339C	GWT1	P47026	490 aa		4.96	□□□□□ -1.62
UBC11	YOR339C	TAF4	P50105	388 aa		4.96	□□□□□ -1.62
UBC11	YOR339C	TIM10	P87108	93 aa		4.96	□□□□□ -1.62
UBC11	YOR339C	PIN3	Q06449	215 aa		4.96	□□□□□ -1.62
UBC11	YOR339C	YOR186W	Q08560	144 aa		4.96	□□□□□ -1.62
UBC11	YOR339C	MPD1	Q12404	318 aa	Known RBP	4.96	□□□□□ -1.62
UBC11	YOR339C	RPL39	P04650	51 aa		4.95	□□□□□ -1.62
UBC11	YOR339C	AAC1	P04710	309 aa		4.95	□□□□□ -1.62
UBC11	YOR339C	SPS4	P09937	338 aa		4.95	□□□□□ -1.62
UBC11	YOR339C	YLL053C	P0CD98	152 aa		4.95	□□□□□ -1.62
UBC11	YOR339C	HNM1	P19807	563 aa		4.95	□□□□□ -1.62
UBC11	YOR339C	IMP1	P28627	190 aa		4.95	□□□□□ -1.62
UBC11	YOR339C	PEX4	P29340	183 aa		4.95	□□□□□ -1.62
UBC11	YOR339C	MNS1	P32906	549 aa		4.95	□□□□□ -1.62
UBC11	YOR339C	YOX1	P34161	385 aa		4.95	□□□□□ -1.62
UBC11	YOR339C	NAT2	P37293	288 aa		4.95	□□□□□ -1.62
UBC11	YOR339C	YBR242W	P38331	238 aa		4.95	□□□□□ -1.62
UBC11	YOR339C	SKP1	P52286	194 aa		4.95	□□□□□ -1.62
UBC11	YOR339C	RSM27	P53305	110 aa		4.95	□□□□□ -1.62
UBC11	YOR339C	TY1A-DR2	Q03964	440 aa	Known RBP	4.95	□□□□□ -1.62
UBC11	YOR339C	YDR114C	Q04597	100 aa		4.95	□□□□□ -1.62
UBC11	YOR339C	YMR254C	Q04838	102 aa		4.95	□□□□□ -1.62
UBC11	YOR339C	YLR108C	Q12259	485 aa		4.95	□□□□□ -1.62
UBC11	YOR339C	YML003W	P0CF16	290 aa		4.94	□□□□□ -1.62
UBC11	YOR339C	PET122	P10355	254 aa		4.94	□□□□□ -1.62
UBC11	YOR339C	CDC23	P16522	626 aa		4.94	□□□□□ -1.62
UBC11	YOR339C	IFM1	P25038	676 aa		4.94	□□□□□ -1.62
UBC11	YOR339C	RNA14	P25298	677 aa	Known RBP	4.94	□□□□□ -1.62
UBC11	YOR339C	ATG22	P25568	528 aa		4.94	□□□□□ -1.62
UBC11	YOR339C	ERG3	P32353	365 aa		4.94	□□□□□ -1.62
UBC11	YOR339C	MRPL27	P36526	146 aa	Predicted RBP	4.94	□□□□□ -1.62
UBC11	YOR339C	RMD6	P39975	231 aa		4.94	□□□□□ -1.62
UBC11	YOR339C	YER121W	P40076	114 aa		4.94	□□□□□ -1.62
UBC11	YOR339C	ARG5,6	Q01217	863 aa		4.94	□□□□□ -1.62
UBC11	YOR339C	PRM15	Q03262	622 aa		4.94	□□□□□ -1.62
UBC11	YOR339C	PML1	Q07930	204 aa	Predicted RBP	4.94	□□□□□ -1.62
UBC11	YOR339C	TMC1	Q08422	150 aa	Predicted RBP	4.94	□□□□□ -1.62
UBC11	YOR339C	YOR385W	Q08909	290 aa		4.94	□□□□□ -1.62
UBC11	YOR339C	FCY22	Q12119	530 aa		4.94	□□□□□ -1.62
UBC11	YOR339C	RDI1	Q12434	202 aa		4.94	□□□□□ -1.62
UBC11	YOR339C	FSH3	Q99369	266 aa		4.94	□□□□□ -1.62
UBC11	YOR339C	RAD52	P06778	471 aa	Known RBP	4.93	□□□□□ -1.62
UBC11	YOR339C	YCR101C	P25607	182 aa		4.93	□□□□□ -1.62
UBC11	YOR339C	GAR1	P28007	205 aa	Known RBP	4.93	□□□□□ -1.62
UBC11	YOR339C	FMT1	P32785	401 aa		4.93	□□□□□ -1.62
UBC11	YOR339C	MRPL3	P36516	390 aa		4.93	□□□□□ -1.62
UBC11	YOR339C	SWD3	P38123	315 aa		4.93	□□□□□ -1.62
UBC11	YOR339C	CTR2	P38865	189 aa		4.93	□□□□□ -1.62
UBC11	YOR339C	LNP1	P38878	278 aa		4.93	□□□□□ -1.62
UBC11	YOR339C	CCS1	P40202	249 aa	Known RBP	4.93	□□□□□ -1.62
UBC11	YOR339C	GLR1	P41921	483 aa	Known RBP	4.93	□□□□□ -1.62
UBC11	YOR339C	GON7	P46984	123 aa		4.93	□□□□□ -1.62
UBC11	YOR339C	MRX5	P47007	382 aa		4.93	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 94.7 ms