RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C SOK2P53438 785 aaPredicted RBP4.34□□□□□ -1.71
NUP116YMR047C HHO1P53551 258 aa4.34□□□□□ -1.71
NUP116YMR047C APM1Q00776 475 aaPredicted RBP4.34□□□□□ -1.71
NUP116YMR047C USB1Q12208 290 aaKnown RBP4.34□□□□□ -1.71
NUP116YMR047C SLO1Q3E784 85 aa4.34□□□□□ -1.71
NUP116YMR047C CAP2P13517 287 aa4.34□□□□□ -1.71
NUP116YMR047C RPB3P16370 318 aaKnown RBP4.34□□□□□ -1.71
NUP116YMR047C MDH3P32419 343 aaKnown RBP RIP-Chip data4.34□□□□□ -1.71not detected
NUP116YMR047C TUL1P36096 758 aa4.34□□□□□ -1.71
NUP116YMR047C DTR1P38125 572 aa4.34□□□□□ -1.71
NUP116YMR047C ROT2P38138 954 aa4.34□□□□□ -1.71
NUP116YMR047C GPX2P38143 162 aa4.34□□□□□ -1.71
NUP116YMR047C RCK1P38622 512 aa4.34□□□□□ -1.71
NUP116YMR047C YEL057CP39983 233 aa4.34□□□□□ -1.71
NUP116YMR047C PGD1P40356 397 aa4.34□□□□□ -1.71
NUP116YMR047C ECO1P43605 281 aa4.34□□□□□ -1.71
NUP116YMR047C YPR109WQ06104 294 aa4.34□□□□□ -1.71
NUP116YMR047C AIM6Q07716 390 aa4.34□□□□□ -1.71
NUP116YMR047C RDR1Q08904 546 aa4.34□□□□□ -1.71
NUP116YMR047C YPR145C-AQ2V2P0 78 aa4.34□□□□□ -1.71
NUP116YMR047C YIL134C-AQ45U18 67 aa4.34□□□□□ -1.71
NUP116YMR047C FAS1P07149 2051 aaKnown RBP4.34□□□□□ -1.71
NUP116YMR047C IRA1P18963 3092 aa4.34□□□□□ -1.71
NUP116YMR047C MES1P00958 751 aaKnown RBP4.34□□□□□ -1.72
NUP116YMR047C HTA1P04911 132 aaKnown RBP4.34□□□□□ -1.72
NUP116YMR047C CPR1P14832 162 aaKnown RBP4.34□□□□□ -1.72
NUP116YMR047C NOP1P15646 327 aaKnown RBP4.34□□□□□ -1.72
NUP116YMR047C MCK1P21965 375 aaKnown RBP4.34□□□□□ -1.72
NUP116YMR047C SCO1P23833 295 aa4.34□□□□□ -1.72
NUP116YMR047C ALP1P38971 573 aa4.34□□□□□ -1.72
NUP116YMR047C GDI1P39958 451 aaKnown RBP4.34□□□□□ -1.72
NUP116YMR047C BUR6P40096 142 aa4.34□□□□□ -1.72
NUP116YMR047C YOL159C-AQ3E769 90 aa4.34□□□□□ -1.72
NUP116YMR047C YCR075W-AQ3E830 75 aa4.34□□□□□ -1.72
NUP116YMR047C HEM13P11353 328 aaKnown RBP4.33□□□□□ -1.72
NUP116YMR047C CKA1P15790 372 aa4.33□□□□□ -1.72
NUP116YMR047C TOA2P32774 122 aa4.33□□□□□ -1.72
NUP116YMR047C SHE2P36068 246 aaKnown RBP RIP-Chip data4.33□□□□□ -1.72not detected
NUP116YMR047C MRPL36P36531 177 aa4.33□□□□□ -1.72
NUP116YMR047C LSM2P38203 95 aaKnown RBP4.33□□□□□ -1.72
NUP116YMR047C PRS3P38689 320 aaKnown RBP4.33□□□□□ -1.72
NUP116YMR047C HPA3P39979 161 aa4.33□□□□□ -1.72
NUP116YMR047C RIB4P50861 169 aaPredicted RBP4.33□□□□□ -1.72
NUP116YMR047C TDA1Q03533 586 aa4.33□□□□□ -1.72
NUP116YMR047C FSF1Q12029 327 aaKnown RBP4.33□□□□□ -1.72
NUP116YMR047C YDL211CQ12121 372 aa4.33□□□□□ -1.72
NUP116YMR047C TFC7Q12415 435 aa4.33□□□□□ -1.72
NUP116YMR047C RPL20AP0CX23 172 aaKnown RBP4.33□□□□□ -1.72
NUP116YMR047C RPL20BP0CX24 172 aaPredicted RBP4.33□□□□□ -1.72
NUP116YMR047C EXG1P23776 448 aaKnown RBP4.33□□□□□ -1.72
NUP116YMR047C COS9P36034 407 aa4.33□□□□□ -1.72
NUP116YMR047C YKL070WP36087 169 aa4.33□□□□□ -1.72
NUP116YMR047C MBA1P38300 278 aa4.33□□□□□ -1.72
NUP116YMR047C NSG1P38837 291 aa4.33□□□□□ -1.72
NUP116YMR047C ECM27P47144 725 aa4.33□□□□□ -1.72
NUP116YMR047C MAK3Q03503 176 aa4.33□□□□□ -1.72
NUP116YMR047C SRB6P32570 121 aa4.33□□□□□ -1.72
NUP116YMR047C PDC2P32896 925 aa4.33□□□□□ -1.72
NUP116YMR047C PRY2P36110 329 aa4.33□□□□□ -1.72
NUP116YMR047C AVT5P38176 459 aa4.33□□□□□ -1.72
NUP116YMR047C TSL1P38427 1098 aaKnown RBP4.33□□□□□ -1.72
NUP116YMR047C YHL037CP38733 133 aa4.33□□□□□ -1.72
NUP116YMR047C YHR177WP38867 453 aa4.33□□□□□ -1.72
NUP116YMR047C GET2P40056 285 aa4.33□□□□□ -1.72
NUP116YMR047C DPB11P47027 764 aaPredicted RBP4.33□□□□□ -1.72
NUP116YMR047C PHB2P50085 310 aa4.33□□□□□ -1.72
NUP116YMR047C YGL235WP53071 178 aa4.33□□□□□ -1.72
NUP116YMR047C GET1P53192 235 aa4.33□□□□□ -1.72
NUP116YMR047C MPP6P53725 186 aaPredicted RBP4.33□□□□□ -1.72
NUP116YMR047C CPR8P53728 308 aa4.33□□□□□ -1.72
NUP116YMR047C ARG5,6Q01217 863 aa4.33□□□□□ -1.72
NUP116YMR047C VTS1Q08831 523 aaKnown RBP RIP-Chip data4.33□□□□□ -1.72not detected
NUP116YMR047C FCF2Q12035 217 aaPredicted RBP4.33□□□□□ -1.72
NUP116YMR047C SFG1Q12507 346 aa4.33□□□□□ -1.72
NUP116YMR047C IRA2P19158 3079 aa4.32□□□□□ -1.72
NUP116YMR047C SAG1P20840 650 aa4.32□□□□□ -1.72
NUP116YMR047C SUA7P29055 345 aaPredicted RBP4.32□□□□□ -1.72
NUP116YMR047C GLR1P41921 483 aaKnown RBP4.32□□□□□ -1.72
NUP116YMR047C CAK1P43568 368 aaPredicted RBP4.32□□□□□ -1.72
NUP116YMR047C YJR012CP47087 207 aa4.32□□□□□ -1.72
NUP116YMR047C PNC1P53184 216 aaKnown RBP4.32□□□□□ -1.72
NUP116YMR047C ASI3P53983 676 aa4.32□□□□□ -1.72
NUP116YMR047C PET191Q02772 108 aa4.32□□□□□ -1.72
NUP116YMR047C MET31Q03081 177 aa4.32□□□□□ -1.72
NUP116YMR047C YOL131WQ08270 108 aa4.32□□□□□ -1.72
NUP116YMR047C MCP1Q12106 302 aa4.32□□□□□ -1.72
NUP116YMR047C YOR097CQ12274 175 aaPredicted RBP4.32□□□□□ -1.72
NUP116YMR047C PFK27Q12471 397 aaPredicted RBP4.32□□□□□ -1.72
NUP116YMR047C Q0142Q9ZZW4 58 aa4.32□□□□□ -1.72
NUP116YMR047C YCL002CP25565 263 aa4.32□□□□□ -1.72
NUP116YMR047C MIG1P27705 504 aa4.32□□□□□ -1.72
NUP116YMR047C SEC17P32602 292 aa4.32□□□□□ -1.72
NUP116YMR047C RIB1P38066 345 aa4.32□□□□□ -1.72
NUP116YMR047C THI2P38141 450 aa4.32□□□□□ -1.72
NUP116YMR047C YBR241CP38142 488 aa4.32□□□□□ -1.72
NUP116YMR047C ANS1P38832 159 aa4.32□□□□□ -1.72
NUP116YMR047C POP1P41812 875 aa4.32□□□□□ -1.72
NUP116YMR047C GWT1P47026 490 aa4.32□□□□□ -1.72
NUP116YMR047C MGA1P53050 456 aa4.32□□□□□ -1.72
NUP116YMR047C MRH4P53166 561 aa4.32□□□□□ -1.72
Retrieved 100 of 5,963 RNA–protein pairs in 37 ms