RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W LOH1P47055 219 aa5.3□□□□□ -1.56
RPN11YFR004W TAD2P47058 250 aa5.3□□□□□ -1.56
RPN11YFR004W YJR111CP47148 283 aaKnown RBP5.3□□□□□ -1.56
RPN11YFR004W YNR071CP53757 342 aa5.3□□□□□ -1.56
RPN11YFR004W YLR152CP54072 576 aa5.3□□□□□ -1.56
RPN11YFR004W ERV25P54837 211 aaKnown RBP5.3□□□□□ -1.56
RPN11YFR004W BNA7Q04066 261 aa5.3□□□□□ -1.56
RPN11YFR004W MRPL1Q04599 285 aa5.3□□□□□ -1.56
RPN11YFR004W EAF3Q12432 401 aa5.3□□□□□ -1.56
RPN11YFR004W SET6Q12529 373 aa5.3□□□□□ -1.56
RPN11YFR004W FUS3P16892 353 aaKnown RBP5.29□□□□□ -1.56
RPN11YFR004W KRR1P25586 316 aaPredicted RBP5.29□□□□□ -1.56
RPN11YFR004W TIP1P27654 210 aaPredicted RBP5.29□□□□□ -1.56
RPN11YFR004W MSN4P33749 630 aa5.29□□□□□ -1.56
RPN11YFR004W SRP102P36057 244 aaPredicted RBP5.29□□□□□ -1.56
RPN11YFR004W SSH1P38353 490 aaKnown RBP5.29□□□□□ -1.56
RPN11YFR004W ARO9P38840 513 aaPredicted RBP5.29□□□□□ -1.56
RPN11YFR004W AVT7P40501 490 aa5.29□□□□□ -1.56
RPN11YFR004W YIL067CP40514 678 aa5.29□□□□□ -1.56
RPN11YFR004W LSM1P47017 172 aaKnown RBP5.29□□□□□ -1.56
RPN11YFR004W YLR460CP54007 376 aa5.29□□□□□ -1.56
RPN11YFR004W LAP3Q01532 483 aaKnown RBP RIP-Chip data5.29□□□□□ -1.56not detected
RPN11YFR004W RVB1Q03940 463 aaKnown RBP5.29□□□□□ -1.56
RPN11YFR004W TRI1Q05024 226 aa5.29□□□□□ -1.56
RPN11YFR004W YOR343CQ12484 108 aa5.29□□□□□ -1.56
RPN11YFR004W CDC39P25655 2108 aaKnown RBP5.29□□□□□ -1.56
RPN11YFR004W SEC22P22214 214 aa5.28□□□□□ -1.56
RPN11YFR004W HXT2P23585 541 aa5.28□□□□□ -1.56
RPN11YFR004W DLS1P40366 167 aa5.28□□□□□ -1.56
RPN11YFR004W BMT5P40493 336 aa5.28□□□□□ -1.56
RPN11YFR004W SYS1P41544 203 aa5.28□□□□□ -1.56
RPN11YFR004W BUD8P41698 603 aa5.28□□□□□ -1.56
RPN11YFR004W ECO1P43605 281 aa5.28□□□□□ -1.56
RPN11YFR004W YHC3P47040 408 aa5.28□□□□□ -1.56
RPN11YFR004W BXI1P48558 297 aa5.28□□□□□ -1.56
RPN11YFR004W UBP8P50102 471 aa5.28□□□□□ -1.56
RPN11YFR004W YGL159WP53110 370 aa5.28□□□□□ -1.56
RPN11YFR004W RMD9P53140 646 aaKnown RBP5.28□□□□□ -1.56
RPN11YFR004W GTF1P53260 183 aaPredicted RBP5.28□□□□□ -1.56
RPN11YFR004W MTM1P53320 366 aa5.28□□□□□ -1.56
RPN11YFR004W GIM3P53900 129 aa5.28□□□□□ -1.56
RPN11YFR004W SNX41Q04053 625 aa5.28□□□□□ -1.56
RPN11YFR004W ANT1Q06497 328 aa5.28□□□□□ -1.56
RPN11YFR004W YOR385WQ08909 290 aa5.28□□□□□ -1.56
RPN11YFR004W YLR108CQ12259 485 aa5.28□□□□□ -1.56
RPN11YFR004W PRM4Q12498 284 aa5.28□□□□□ -1.56
RPN11YFR004W TFB5Q3E7C1 72 aaPredicted RBP5.28□□□□□ -1.56
RPN11YFR004W CHO1P08456 276 aa5.27□□□□□ -1.57
RPN11YFR004W PUT1P09368 476 aa5.27□□□□□ -1.57
RPN11YFR004W MATALPHA1P0CY06 175 aa5.27□□□□□ -1.57
RPN11YFR004W HMLALPHA1P0CY07 175 aa5.27□□□□□ -1.57
RPN11YFR004W URA6P15700 204 aa5.27□□□□□ -1.57
RPN11YFR004W MEK1P24719 497 aaPredicted RBP5.27□□□□□ -1.57
RPN11YFR004W PET18P25362 215 aa5.27□□□□□ -1.57
RPN11YFR004W CAM1P29547 415 aaKnown RBP5.27□□□□□ -1.57
RPN11YFR004W YBL010CP32788 280 aa5.27□□□□□ -1.57
RPN11YFR004W PDC2P32896 925 aa5.27□□□□□ -1.57
RPN11YFR004W SNC2P33328 115 aa5.27□□□□□ -1.57
RPN11YFR004W PTC7P38797 343 aa5.27□□□□□ -1.57
RPN11YFR004W BFR1P38934 470 aaKnown RBP RIP-Chip data5.27□□□□□ -1.57not detected
RPN11YFR004W SSO2P39926 295 aa5.27□□□□□ -1.57
RPN11YFR004W YER010CP40011 234 aa5.27□□□□□ -1.57
RPN11YFR004W LSM4P40070 187 aaKnown RBP5.27□□□□□ -1.57
RPN11YFR004W PEF1P53238 335 aa5.27□□□□□ -1.57
RPN11YFR004W YGR066CP53242 292 aa5.27□□□□□ -1.57
RPN11YFR004W SCW4P53334 386 aaKnown RBP5.27□□□□□ -1.57
RPN11YFR004W YDR249CQ03787 373 aa5.27□□□□□ -1.57
RPN11YFR004W NNT1Q05874 261 aa5.27□□□□□ -1.57
RPN11YFR004W IRC19Q07843 230 aa5.27□□□□□ -1.57
RPN11YFR004W HMS1Q12398 434 aa5.27□□□□□ -1.57
RPN11YFR004W CTA1P15202 515 aa5.26□□□□□ -1.57
RPN11YFR004W FRS1P15624 595 aaKnown RBP5.26□□□□□ -1.57
RPN11YFR004W HNM1P19807 563 aa5.26□□□□□ -1.57
RPN11YFR004W PCL1P24867 279 aa5.26□□□□□ -1.57
RPN11YFR004W FMT1P32785 401 aa5.26□□□□□ -1.57
RPN11YFR004W EMP24P32803 203 aaKnown RBP5.26□□□□□ -1.57
RPN11YFR004W PPZ2P33329 710 aa5.26□□□□□ -1.57
RPN11YFR004W CBT1P36038 271 aaPredicted RBP5.26□□□□□ -1.57
RPN11YFR004W MRPL27P36526 146 aaPredicted RBP5.26□□□□□ -1.57
RPN11YFR004W URM1P40554 99 aaPredicted RBP5.26□□□□□ -1.57
RPN11YFR004W GLR1P41921 483 aaKnown RBP5.26□□□□□ -1.57
RPN11YFR004W ECL1P48235 211 aa5.26□□□□□ -1.57
RPN11YFR004W RHO5P53879 331 aaKnown RBP5.26□□□□□ -1.57
RPN11YFR004W SAM50P53969 484 aa5.26□□□□□ -1.57
RPN11YFR004W APM1Q00776 475 aaPredicted RBP5.26□□□□□ -1.57
RPN11YFR004W ACS1Q01574 713 aa5.26□□□□□ -1.57
RPN11YFR004W GRC3Q07845 632 aa5.26□□□□□ -1.57
RPN11YFR004W YRM1Q12340 786 aa5.26□□□□□ -1.57
RPN11YFR004W TFC7Q12415 435 aa5.26□□□□□ -1.57
RPN11YFR004W YHR213W-AQ8TGT4 77 aa5.26□□□□□ -1.57
RPN11YFR004W TAD3Q9URQ3 322 aa5.26□□□□□ -1.57
RPN11YFR004W FLO9P39712 1322 aa5.25□□□□□ -1.57
RPN11YFR004W TPI1P00942 248 aaKnown RBP5.25□□□□□ -1.57
RPN11YFR004W CNB1P25296 175 aa5.25□□□□□ -1.57
RPN11YFR004W VMA5P31412 392 aaKnown RBP5.25□□□□□ -1.57
RPN11YFR004W COQ2P32378 372 aa5.25□□□□□ -1.57
RPN11YFR004W VMA8P32610 256 aaKnown RBP5.25□□□□□ -1.57
RPN11YFR004W POP8P38208 133 aa5.25□□□□□ -1.57
RPN11YFR004W LAG1P38703 411 aa5.25□□□□□ -1.57
RPN11YFR004W COS8P38723 381 aa5.25□□□□□ -1.57
Retrieved 100 of 5,963 RNA–protein pairs in 66.1 ms