RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 SNX27Q96L92 541 aa24.59■■□□□ 1.53
CLN3-232ENST00000568443 PRKD2Q9BZL6 878 aa24.59■■□□□ 1.53
CLN3-232ENST00000568443 CLUHO75153 1309 aa24.59■■□□□ 1.53
CLN3-232ENST00000568443 CLDN3O15551 220 aa24.58■■□□□ 1.53
CLN3-232ENST00000568443 ZMYND10O75800 440 aa24.58■■□□□ 1.53
CLN3-232ENST00000568443 KRT18P05783 430 aaKnown RBP24.58■■□□□ 1.53
CLN3-232ENST00000568443 KCNE1P15382 129 aa24.58■■□□□ 1.53
CLN3-232ENST00000568443 FGFR3P22607 806 aa24.58■■□□□ 1.53
CLN3-232ENST00000568443 IGFBP6P24592 240 aaPredicted RBP24.58■■□□□ 1.53
CLN3-232ENST00000568443 MATR3P43243 847 aaKnown RBP eCLIP24.58■■□□□ 1.53
CLN3-232ENST00000568443 GRIN1Q05586 938 aa24.58■■□□□ 1.53
CLN3-232ENST00000568443 SOX4Q06945 474 aaPredicted RBP24.58■■□□□ 1.53
CLN3-232ENST00000568443 NOLC1Q14978 699 aaKnown RBP eCLIP24.58■■□□□ 1.53
CLN3-232ENST00000568443 HAUS6Q7Z4H7 955 aa24.58■■□□□ 1.53
CLN3-232ENST00000568443 ZMAT2Q96NC0 199 aaKnown RBP24.58■■□□□ 1.53
CLN3-232ENST00000568443 REEP2Q9BRK0 252 aa24.58■■□□□ 1.53
CLN3-232ENST00000568443 BACH2Q9BYV9 841 aa24.58■■□□□ 1.53
CLN3-232ENST00000568443 SMOC2Q9H3U7 446 aa24.58■■□□□ 1.53
CLN3-232ENST00000568443 PAPLNO95428 1278 aa24.57■■□□□ 1.52
CLN3-232ENST00000568443 PLCG1P19174 1290 aa24.57■■□□□ 1.52
CLN3-232ENST00000568443 KARSQ15046 597 aaKnown RBP24.57■■□□□ 1.52
CLN3-232ENST00000568443 LIN9Q5TKA1 542 aa24.57■■□□□ 1.52
CLN3-232ENST00000568443 MYCT1Q8N699 235 aa24.57■■□□□ 1.52
CLN3-232ENST00000568443 BICD1Q96G01 975 aa24.57■■□□□ 1.52
CLN3-232ENST00000568443 BLOC1S4Q9NUP1 217 aa24.57■■□□□ 1.52
CLN3-232ENST00000568443 CNTN3Q9P232 1028 aa24.57■■□□□ 1.52
CLN3-232ENST00000568443 FBXW11Q9UKB1 542 aa24.57■■□□□ 1.52
CLN3-232ENST00000568443 CITO14578 2027 aa24.57■■□□□ 1.52
CLN3-232ENST00000568443 ADAM12O43184 909 aa24.56■■□□□ 1.52
CLN3-232ENST00000568443 FAM13AO94988 1023 aa24.56■■□□□ 1.52
CLN3-232ENST00000568443 OR1D2P34982 312 aa24.56■■□□□ 1.52
CLN3-232ENST00000568443 NCKAP1LP55160 1127 aa24.56■■□□□ 1.52
CLN3-232ENST00000568443 MCM6Q14566 821 aa24.56■■□□□ 1.52
CLN3-232ENST00000568443 SEZ6Q53EL9 994 aa24.56■■□□□ 1.52
CLN3-232ENST00000568443 IER5LQ5T953 404 aa24.56■■□□□ 1.52
CLN3-232ENST00000568443 CD300LGQ6UXG3 332 aa24.56■■□□□ 1.52
CLN3-232ENST00000568443 C3orf58Q8NDZ4 430 aa24.56■■□□□ 1.52
CLN3-232ENST00000568443 LRRC15Q8TF66 581 aa24.56■■□□□ 1.52
CLN3-232ENST00000568443 RAD54LQ92698 747 aa24.56■■□□□ 1.52
CLN3-232ENST00000568443 PRRX2Q99811 253 aa24.56■■□□□ 1.52
CLN3-232ENST00000568443 KCNK12Q9HB15 430 aa24.56■■□□□ 1.52
CLN3-232ENST00000568443 IGSF9Q9P2J2 1179 aa24.56■■□□□ 1.52
CLN3-232ENST00000568443 CLIC4Q9Y696 253 aa24.56■■□□□ 1.52
CLN3-232ENST00000568443 VWA8A3KMH1 1905 aa24.55■■□□□ 1.52
CLN3-232ENST00000568443 I3L4J1 428 aa24.55■■□□□ 1.52
CLN3-232ENST00000568443 PODXLO00592 558 aa24.55■■□□□ 1.52
CLN3-232ENST00000568443 N4BP1O75113 896 aaKnown RBP24.55■■□□□ 1.52
CLN3-232ENST00000568443 PDGFBP01127 241 aaPredicted RBP24.55■■□□□ 1.52
CLN3-232ENST00000568443 SYT1P21579 422 aa24.55■■□□□ 1.52
CLN3-232ENST00000568443 SCP2P22307 547 aa24.55■■□□□ 1.52
CLN3-232ENST00000568443 TKTP29401 623 aaKnown RBP24.55■■□□□ 1.52
CLN3-232ENST00000568443 RPL9P32969 192 aaKnown RBP24.55■■□□□ 1.52
CLN3-232ENST00000568443 BRCC3P46736 316 aa24.55■■□□□ 1.52
CLN3-232ENST00000568443 MCL1Q07820 350 aa24.55■■□□□ 1.52
CLN3-232ENST00000568443 TDGQ13569 410 aa24.55■■□□□ 1.52
CLN3-232ENST00000568443 RAB33AQ14088 237 aa24.55■■□□□ 1.52
CLN3-232ENST00000568443 PPM1LQ5SGD2 360 aa24.55■■□□□ 1.52
CLN3-232ENST00000568443 ANKS3Q6ZW76 656 aa24.55■■□□□ 1.52
CLN3-232ENST00000568443 ZHX3Q9H4I2 956 aa24.55■■□□□ 1.52
CLN3-232ENST00000568443 PARVGQ9HBI0 331 aa24.55■■□□□ 1.52
CLN3-232ENST00000568443 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP24.55■■□□□ 1.52
CLN3-232ENST00000568443 MTRRQ9UBK8 725 aa24.55■■□□□ 1.52
CLN3-232ENST00000568443 C8AP07357 584 aa24.54■■□□□ 1.52
CLN3-232ENST00000568443 HNRNPA1P09651 372 aaKnown RBP eCLIP24.54■■□□□ 1.52
CLN3-232ENST00000568443 AVPR2P30518 371 aa24.54■■□□□ 1.52
CLN3-232ENST00000568443 SLC10A6Q3KNW5 377 aa24.54■■□□□ 1.52
CLN3-232ENST00000568443 LARP4BQ92615 738 aaKnown RBP24.54■■□□□ 1.52
CLN3-232ENST00000568443 C18orf25Q96B23 403 aaPredicted RBP24.54■■□□□ 1.52
CLN3-232ENST00000568443 INTS4Q96HW7 963 aaKnown RBP24.54■■□□□ 1.52
CLN3-232ENST00000568443 MYADMQ96S97 322 aa24.54■■□□□ 1.52
CLN3-232ENST00000568443 CCSER1Q9C0I3 900 aa24.54■■□□□ 1.52
CLN3-232ENST00000568443 NUB1Q9Y5A7 615 aa24.54■■□□□ 1.52
CLN3-232ENST00000568443 BACE2Q9Y5Z0 518 aa24.54■■□□□ 1.52
CLN3-232ENST00000568443 CDY1Q9Y6F8 540 aa24.54■■□□□ 1.52
CLN3-232ENST00000568443 TRAK2O60296 914 aa24.53■■□□□ 1.52
CLN3-232ENST00000568443 CLTAP09496 248 aa24.53■■□□□ 1.52
CLN3-232ENST00000568443 MARCKSP29966 332 aaPredicted RBP24.53■■□□□ 1.52
CLN3-232ENST00000568443 HOXD11P31277 338 aaPredicted RBP24.53■■□□□ 1.52
CLN3-232ENST00000568443 DDIT3P35638 169 aa24.53■■□□□ 1.52
CLN3-232ENST00000568443 LIG4P49917 911 aa24.53■■□□□ 1.52
CLN3-232ENST00000568443 ZNF131P52739 623 aa24.53■■□□□ 1.52
CLN3-232ENST00000568443 VCPP55072 806 aaKnown RBP24.53■■□□□ 1.52
CLN3-232ENST00000568443 NHLH1Q02575 133 aa24.53■■□□□ 1.52
CLN3-232ENST00000568443 PTPAQ15257 358 aa24.53■■□□□ 1.52
CLN3-232ENST00000568443 AXDND1Q5T1B0 1012 aaPredicted RBP24.53■■□□□ 1.52
CLN3-232ENST00000568443 KCNN1Q92952 543 aa24.53■■□□□ 1.52
CLN3-232ENST00000568443 EPSTI1Q96J88 318 aa24.53■■□□□ 1.52
CLN3-232ENST00000568443 EPS15L1Q9UBC2 864 aa24.53■■□□□ 1.52
CLN3-232ENST00000568443 TBX20Q9UMR3 447 aa24.53■■□□□ 1.52
CLN3-232ENST00000568443 K7ENM7 598 aa24.52■■□□□ 1.52
CLN3-232ENST00000568443 HNRNPDLO14979 420 aaKnown RBP24.52■■□□□ 1.52
CLN3-232ENST00000568443 MEFVO15553 781 aaPredicted RBP24.52■■□□□ 1.52
CLN3-232ENST00000568443 TBCAO75347 108 aaKnown RBP24.52■■□□□ 1.52
CLN3-232ENST00000568443 RESTQ13127 1097 aa24.52■■□□□ 1.52
CLN3-232ENST00000568443 UVSSAQ2YD98 709 aa24.52■■□□□ 1.52
CLN3-232ENST00000568443 SPECC1Q5M775 1068 aa24.52■■□□□ 1.52
CLN3-232ENST00000568443 GRASPQ7Z6J2 395 aaPredicted RBP24.52■■□□□ 1.52
CLN3-232ENST00000568443 HAPLN2Q9GZV7 340 aa24.52■■□□□ 1.52
CLN3-232ENST00000568443 MFSD1Q9H3U5 465 aa24.52■■□□□ 1.52
CLN3-232ENST00000568443 PLEKHA5Q9HAU0 1116 aa24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms