RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 SNX27Q96L92 541 aa24.59■■□□□ 1.53
CLN3-215ENST00000565236 PRKD2Q9BZL6 878 aa24.59■■□□□ 1.53
CLN3-215ENST00000565236 CLUHO75153 1309 aa24.59■■□□□ 1.53
CLN3-215ENST00000565236 CLDN3O15551 220 aa24.58■■□□□ 1.53
CLN3-215ENST00000565236 ZMYND10O75800 440 aa24.58■■□□□ 1.53
CLN3-215ENST00000565236 KRT18P05783 430 aaKnown RBP24.58■■□□□ 1.53
CLN3-215ENST00000565236 KCNE1P15382 129 aa24.58■■□□□ 1.53
CLN3-215ENST00000565236 FGFR3P22607 806 aa24.58■■□□□ 1.53
CLN3-215ENST00000565236 IGFBP6P24592 240 aaPredicted RBP24.58■■□□□ 1.53
CLN3-215ENST00000565236 MATR3P43243 847 aaKnown RBP eCLIP24.58■■□□□ 1.53
CLN3-215ENST00000565236 GRIN1Q05586 938 aa24.58■■□□□ 1.53
CLN3-215ENST00000565236 SOX4Q06945 474 aaPredicted RBP24.58■■□□□ 1.53
CLN3-215ENST00000565236 NOLC1Q14978 699 aaKnown RBP eCLIP24.58■■□□□ 1.53
CLN3-215ENST00000565236 HAUS6Q7Z4H7 955 aa24.58■■□□□ 1.53
CLN3-215ENST00000565236 ZMAT2Q96NC0 199 aaKnown RBP24.58■■□□□ 1.53
CLN3-215ENST00000565236 REEP2Q9BRK0 252 aa24.58■■□□□ 1.53
CLN3-215ENST00000565236 BACH2Q9BYV9 841 aa24.58■■□□□ 1.53
CLN3-215ENST00000565236 SMOC2Q9H3U7 446 aa24.58■■□□□ 1.53
CLN3-215ENST00000565236 PAPLNO95428 1278 aa24.57■■□□□ 1.52
CLN3-215ENST00000565236 PLCG1P19174 1290 aa24.57■■□□□ 1.52
CLN3-215ENST00000565236 KARSQ15046 597 aaKnown RBP24.57■■□□□ 1.52
CLN3-215ENST00000565236 LIN9Q5TKA1 542 aa24.57■■□□□ 1.52
CLN3-215ENST00000565236 MYCT1Q8N699 235 aa24.57■■□□□ 1.52
CLN3-215ENST00000565236 BICD1Q96G01 975 aa24.57■■□□□ 1.52
CLN3-215ENST00000565236 BLOC1S4Q9NUP1 217 aa24.57■■□□□ 1.52
CLN3-215ENST00000565236 CNTN3Q9P232 1028 aa24.57■■□□□ 1.52
CLN3-215ENST00000565236 FBXW11Q9UKB1 542 aa24.57■■□□□ 1.52
CLN3-215ENST00000565236 CITO14578 2027 aa24.57■■□□□ 1.52
CLN3-215ENST00000565236 ADAM12O43184 909 aa24.56■■□□□ 1.52
CLN3-215ENST00000565236 FAM13AO94988 1023 aa24.56■■□□□ 1.52
CLN3-215ENST00000565236 OR1D2P34982 312 aa24.56■■□□□ 1.52
CLN3-215ENST00000565236 NCKAP1LP55160 1127 aa24.56■■□□□ 1.52
CLN3-215ENST00000565236 MCM6Q14566 821 aa24.56■■□□□ 1.52
CLN3-215ENST00000565236 SEZ6Q53EL9 994 aa24.56■■□□□ 1.52
CLN3-215ENST00000565236 IER5LQ5T953 404 aa24.56■■□□□ 1.52
CLN3-215ENST00000565236 CD300LGQ6UXG3 332 aa24.56■■□□□ 1.52
CLN3-215ENST00000565236 C3orf58Q8NDZ4 430 aa24.56■■□□□ 1.52
CLN3-215ENST00000565236 LRRC15Q8TF66 581 aa24.56■■□□□ 1.52
CLN3-215ENST00000565236 RAD54LQ92698 747 aa24.56■■□□□ 1.52
CLN3-215ENST00000565236 PRRX2Q99811 253 aa24.56■■□□□ 1.52
CLN3-215ENST00000565236 KCNK12Q9HB15 430 aa24.56■■□□□ 1.52
CLN3-215ENST00000565236 IGSF9Q9P2J2 1179 aa24.56■■□□□ 1.52
CLN3-215ENST00000565236 CLIC4Q9Y696 253 aa24.56■■□□□ 1.52
CLN3-215ENST00000565236 VWA8A3KMH1 1905 aa24.55■■□□□ 1.52
CLN3-215ENST00000565236 I3L4J1 428 aa24.55■■□□□ 1.52
CLN3-215ENST00000565236 PODXLO00592 558 aa24.55■■□□□ 1.52
CLN3-215ENST00000565236 N4BP1O75113 896 aaKnown RBP24.55■■□□□ 1.52
CLN3-215ENST00000565236 PDGFBP01127 241 aaPredicted RBP24.55■■□□□ 1.52
CLN3-215ENST00000565236 SYT1P21579 422 aa24.55■■□□□ 1.52
CLN3-215ENST00000565236 SCP2P22307 547 aa24.55■■□□□ 1.52
CLN3-215ENST00000565236 TKTP29401 623 aaKnown RBP24.55■■□□□ 1.52
CLN3-215ENST00000565236 RPL9P32969 192 aaKnown RBP24.55■■□□□ 1.52
CLN3-215ENST00000565236 BRCC3P46736 316 aa24.55■■□□□ 1.52
CLN3-215ENST00000565236 MCL1Q07820 350 aa24.55■■□□□ 1.52
CLN3-215ENST00000565236 TDGQ13569 410 aa24.55■■□□□ 1.52
CLN3-215ENST00000565236 RAB33AQ14088 237 aa24.55■■□□□ 1.52
CLN3-215ENST00000565236 PPM1LQ5SGD2 360 aa24.55■■□□□ 1.52
CLN3-215ENST00000565236 ANKS3Q6ZW76 656 aa24.55■■□□□ 1.52
CLN3-215ENST00000565236 ZHX3Q9H4I2 956 aa24.55■■□□□ 1.52
CLN3-215ENST00000565236 PARVGQ9HBI0 331 aa24.55■■□□□ 1.52
CLN3-215ENST00000565236 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP24.55■■□□□ 1.52
CLN3-215ENST00000565236 MTRRQ9UBK8 725 aa24.55■■□□□ 1.52
CLN3-215ENST00000565236 C8AP07357 584 aa24.54■■□□□ 1.52
CLN3-215ENST00000565236 HNRNPA1P09651 372 aaKnown RBP eCLIP24.54■■□□□ 1.52
CLN3-215ENST00000565236 AVPR2P30518 371 aa24.54■■□□□ 1.52
CLN3-215ENST00000565236 SLC10A6Q3KNW5 377 aa24.54■■□□□ 1.52
CLN3-215ENST00000565236 LARP4BQ92615 738 aaKnown RBP24.54■■□□□ 1.52
CLN3-215ENST00000565236 C18orf25Q96B23 403 aaPredicted RBP24.54■■□□□ 1.52
CLN3-215ENST00000565236 INTS4Q96HW7 963 aaKnown RBP24.54■■□□□ 1.52
CLN3-215ENST00000565236 MYADMQ96S97 322 aa24.54■■□□□ 1.52
CLN3-215ENST00000565236 CCSER1Q9C0I3 900 aa24.54■■□□□ 1.52
CLN3-215ENST00000565236 NUB1Q9Y5A7 615 aa24.54■■□□□ 1.52
CLN3-215ENST00000565236 BACE2Q9Y5Z0 518 aa24.54■■□□□ 1.52
CLN3-215ENST00000565236 CDY1Q9Y6F8 540 aa24.54■■□□□ 1.52
CLN3-215ENST00000565236 TRAK2O60296 914 aa24.53■■□□□ 1.52
CLN3-215ENST00000565236 CLTAP09496 248 aa24.53■■□□□ 1.52
CLN3-215ENST00000565236 MARCKSP29966 332 aaPredicted RBP24.53■■□□□ 1.52
CLN3-215ENST00000565236 HOXD11P31277 338 aaPredicted RBP24.53■■□□□ 1.52
CLN3-215ENST00000565236 DDIT3P35638 169 aa24.53■■□□□ 1.52
CLN3-215ENST00000565236 LIG4P49917 911 aa24.53■■□□□ 1.52
CLN3-215ENST00000565236 ZNF131P52739 623 aa24.53■■□□□ 1.52
CLN3-215ENST00000565236 VCPP55072 806 aaKnown RBP24.53■■□□□ 1.52
CLN3-215ENST00000565236 NHLH1Q02575 133 aa24.53■■□□□ 1.52
CLN3-215ENST00000565236 PTPAQ15257 358 aa24.53■■□□□ 1.52
CLN3-215ENST00000565236 AXDND1Q5T1B0 1012 aaPredicted RBP24.53■■□□□ 1.52
CLN3-215ENST00000565236 KCNN1Q92952 543 aa24.53■■□□□ 1.52
CLN3-215ENST00000565236 EPSTI1Q96J88 318 aa24.53■■□□□ 1.52
CLN3-215ENST00000565236 EPS15L1Q9UBC2 864 aa24.53■■□□□ 1.52
CLN3-215ENST00000565236 TBX20Q9UMR3 447 aa24.53■■□□□ 1.52
CLN3-215ENST00000565236 K7ENM7 598 aa24.52■■□□□ 1.52
CLN3-215ENST00000565236 HNRNPDLO14979 420 aaKnown RBP24.52■■□□□ 1.52
CLN3-215ENST00000565236 MEFVO15553 781 aaPredicted RBP24.52■■□□□ 1.52
CLN3-215ENST00000565236 TBCAO75347 108 aaKnown RBP24.52■■□□□ 1.52
CLN3-215ENST00000565236 RESTQ13127 1097 aa24.52■■□□□ 1.52
CLN3-215ENST00000565236 UVSSAQ2YD98 709 aa24.52■■□□□ 1.52
CLN3-215ENST00000565236 SPECC1Q5M775 1068 aa24.52■■□□□ 1.52
CLN3-215ENST00000565236 GRASPQ7Z6J2 395 aaPredicted RBP24.52■■□□□ 1.52
CLN3-215ENST00000565236 HAPLN2Q9GZV7 340 aa24.52■■□□□ 1.52
CLN3-215ENST00000565236 MFSD1Q9H3U5 465 aa24.52■■□□□ 1.52
CLN3-215ENST00000565236 PLEKHA5Q9HAU0 1116 aa24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms