RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 MORC2Q9Y6X9 1032 aaPredicted RBP11.1□□□□□ -0.63
USP3-207ENST00000558218 SF3B1O75533 1304 aaKnown RBP eCLIP11.09□□□□□ -0.63
USP3-207ENST00000558218 TMEM189-UBE2V1I3L0A0 370 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 PTGESO14684 152 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 TEX28O15482 410 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 RECQL4O94761 1208 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 EPCAMP16422 314 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 PROZP22891 400 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 YARSP54577 528 aaKnown RBP11.09□□□□□ -0.63
USP3-207ENST00000558218 SF3A1Q15459 793 aaKnown RBP11.09□□□□□ -0.63
USP3-207ENST00000558218 NAB2Q15742 525 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 EEF1DP3Q658K8 133 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 DCLRE1AQ6PJP8 1040 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 ALKAL1Q6UXT8 129 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 RTL10Q7L3V2 364 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 TAS1R1Q7RTX1 841 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 ZDHHC14Q8IZN3 488 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 RPGRIP1Q96KN7 1286 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 TSPAN18Q96SJ8 248 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 PHOX2BQ99453 314 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 TCHPQ9BT92 498 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 CCDC94Q9BW85 323 aaPredicted RBP11.09□□□□□ -0.63
USP3-207ENST00000558218 GPR62Q9BZJ7 368 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 ZSCAN16Q9H4T2 348 aaPredicted RBP11.09□□□□□ -0.63
USP3-207ENST00000558218 POLD4Q9HCU8 107 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 SLC38A7Q9NVC3 462 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 HCN4Q9Y3Q4 1203 aa11.09□□□□□ -0.63
USP3-207ENST00000558218 SFI1A8K8P3 1242 aa11.08□□□□□ -0.64
USP3-207ENST00000558218 TRAPPC3O43617 180 aa11.08□□□□□ -0.64
USP3-207ENST00000558218 TOM1L1O75674 476 aa11.08□□□□□ -0.64
USP3-207ENST00000558218 GLUD1P00367 558 aa11.08□□□□□ -0.64
USP3-207ENST00000558218 SSBP05455 408 aaKnown RBP eCLIP11.08□□□□□ -0.64
USP3-207ENST00000558218 KCNE1P15382 129 aa11.08□□□□□ -0.64
USP3-207ENST00000558218 LIG1P18858 919 aa11.08□□□□□ -0.64
USP3-207ENST00000558218 SYT1P21579 422 aa11.08□□□□□ -0.64
USP3-207ENST00000558218 DDIT3P35638 169 aa11.08□□□□□ -0.64
USP3-207ENST00000558218 ZRSR1Q15695 479 aaKnown RBP11.08□□□□□ -0.64
USP3-207ENST00000558218 KYAT1Q16773 422 aa11.08□□□□□ -0.64
USP3-207ENST00000558218 MPZL3Q6UWV2 235 aa11.08□□□□□ -0.64
USP3-207ENST00000558218 TMEM161BQ8NDZ6 487 aa11.08□□□□□ -0.64
USP3-207ENST00000558218 SNX21Q969T3 373 aa11.08□□□□□ -0.64
USP3-207ENST00000558218 MFSD14AQ96MC6 490 aa11.08□□□□□ -0.64
USP3-207ENST00000558218 ACAP3Q96P50 834 aa11.08□□□□□ -0.64
USP3-207ENST00000558218 PPP1R10Q96QC0 940 aaKnown RBP11.08□□□□□ -0.64
USP3-207ENST00000558218 KIFC3Q9BVG8 833 aa11.08□□□□□ -0.64
USP3-207ENST00000558218 TARS2Q9BW92 718 aaKnown RBP11.08□□□□□ -0.64
USP3-207ENST00000558218 MUTYHQ9UIF7 546 aa11.08□□□□□ -0.64
USP3-207ENST00000558218 MTCL1Q9Y4B5 1905 aaKnown RBP11.07□□□□□ -0.64
USP3-207ENST00000558218 MYH11P35749 1972 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 SMIM28A0A1B0GU29 152 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 VPS37CA5D8V6 355 aaPredicted RBP11.07□□□□□ -0.64
USP3-207ENST00000558218 K7ELQ4 463 aaPredicted RBP11.07□□□□□ -0.64
USP3-207ENST00000558218 C2CD2LO14523 706 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 SLC16A4O15374 487 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 EDN1P05305 212 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 MAPTP10636 758 aaKnown RBP11.07□□□□□ -0.64
USP3-207ENST00000558218 RPL9P32969 192 aaKnown RBP11.07□□□□□ -0.64
USP3-207ENST00000558218 ZNF131P52739 623 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 NCKAP1LP55160 1127 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 COPS2P61201 443 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 ZXDAP98168 799 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 PTPAQ15257 358 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 ZNF568Q3ZCX4 644 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 ARSHQ5FYA8 562 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 RARS2Q5T160 578 aaKnown RBP11.07□□□□□ -0.64
USP3-207ENST00000558218 LILRA6Q6PI73 481 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 TRIM67Q6ZTA4 783 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 OTOP3Q7RTS5 596 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 TAS1R3Q7RTX0 852 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 UBALD2Q8IYN6 164 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 RIN2Q8WYP3 895 aaPredicted RBP11.07□□□□□ -0.64
USP3-207ENST00000558218 PIK3R5Q8WYR1 880 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 TTPALQ9BTX7 342 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 APOL5Q9BWW9 433 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 CDT1Q9H211 546 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 POMKQ9H5K3 350 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 PLEKHA5Q9HAU0 1116 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 ZDHHC7Q9NXF8 308 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 CCDC39Q9UFE4 941 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 USP20Q9Y2K6 914 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 GDAQ9Y2T3 454 aa11.07□□□□□ -0.64
USP3-207ENST00000558218 SRPRBQ9Y5M8 271 aaKnown RBP11.07□□□□□ -0.64
USP3-207ENST00000558218 MYO10Q9HD67 2058 aa11.06□□□□□ -0.64
USP3-207ENST00000558218 ABLIM1O14639 778 aa11.06□□□□□ -0.64
USP3-207ENST00000558218 CLDN3O15551 220 aa11.06□□□□□ -0.64
USP3-207ENST00000558218 B3GAT3O94766 335 aa11.06□□□□□ -0.64
USP3-207ENST00000558218 FGFR3P22607 806 aa11.06□□□□□ -0.64
USP3-207ENST00000558218 MCL1Q07820 350 aa11.06□□□□□ -0.64
USP3-207ENST00000558218 SIGLEC14Q08ET2 396 aa11.06□□□□□ -0.64
USP3-207ENST00000558218 PTPN21Q16825 1174 aa11.06□□□□□ -0.64
USP3-207ENST00000558218 UPP1Q16831 310 aa11.06□□□□□ -0.64
USP3-207ENST00000558218 UVSSAQ2YD98 709 aa11.06□□□□□ -0.64
USP3-207ENST00000558218 FAM171A1Q5VUB5 890 aa11.06□□□□□ -0.64
USP3-207ENST00000558218 TMC5Q6UXY8 1006 aa11.06□□□□□ -0.64
USP3-207ENST00000558218 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.06□□□□□ -0.64
USP3-207ENST00000558218 NYAP1Q6ZVC0 841 aa11.06□□□□□ -0.64
USP3-207ENST00000558218 HAUS6Q7Z4H7 955 aa11.06□□□□□ -0.64
USP3-207ENST00000558218 C12orf76Q8N812 135 aaPredicted RBP11.06□□□□□ -0.64
USP3-207ENST00000558218 LNX1Q8TBB1 728 aaPredicted RBP11.06□□□□□ -0.64
USP3-207ENST00000558218 ZNF516Q92618 1163 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms