RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 DHX8Q14562 1220 aaKnown RBP13.58□□□□□ -0.24
SHMT2-214ENST00000554604 ZNF568Q3ZCX4 644 aa13.58□□□□□ -0.24
SHMT2-214ENST00000554604 TMEM119Q4V9L6 283 aa13.58□□□□□ -0.24
SHMT2-214ENST00000554604 CT47A1Q5JQC4 288 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-214ENST00000554604 SYCE2Q6PIF2 218 aa13.58□□□□□ -0.24
SHMT2-214ENST00000554604 SPATA20Q8TB22 786 aa13.58□□□□□ -0.24
SHMT2-214ENST00000554604 SMARCE1Q969G3 411 aa13.58□□□□□ -0.24
SHMT2-214ENST00000554604 EPSTI1Q96J88 318 aa13.58□□□□□ -0.24
SHMT2-214ENST00000554604 RPGRIP1Q96KN7 1286 aa13.58□□□□□ -0.24
SHMT2-214ENST00000554604 TCHPQ9BT92 498 aa13.58□□□□□ -0.24
SHMT2-214ENST00000554604 PHF7Q9BWX1 381 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-214ENST00000554604 TMEM134Q9H6X4 195 aa13.58□□□□□ -0.24
SHMT2-214ENST00000554604 MARCH5Q9NX47 278 aa13.58□□□□□ -0.24
SHMT2-214ENST00000554604 ARHGAP28Q9P2N2 729 aa13.58□□□□□ -0.24
SHMT2-214ENST00000554604 DACH1Q9UI36 760 aa13.58□□□□□ -0.24
SHMT2-214ENST00000554604 MAN1B1Q9UKM7 699 aa13.58□□□□□ -0.24
SHMT2-214ENST00000554604 TNFSF13BQ9Y275 285 aa13.58□□□□□ -0.24
SHMT2-214ENST00000554604 PLXNA3P51805 1871 aa13.58□□□□□ -0.24
SHMT2-214ENST00000554604 A0A087X0B3 334 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 F8W810 466 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 DCXO43602 365 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 TADA2AO75478 443 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 SMC2O95347 1197 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 KRT18P05783 430 aaKnown RBP13.57□□□□□ -0.24
SHMT2-214ENST00000554604 CNPP09543 421 aaKnown RBP13.57□□□□□ -0.24
SHMT2-214ENST00000554604 PLS3P13797 630 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 EPCAMP16422 314 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 TXLNAP40222 546 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 GLUD2P49448 558 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 YARSP54577 528 aaKnown RBP13.57□□□□□ -0.24
SHMT2-214ENST00000554604 ITIH3Q06033 890 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 TUSC3Q13454 348 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 MORC3Q14149 939 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 NCAPHQ15003 741 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 TMEM31Q5JXX7 168 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 RARS2Q5T160 578 aaKnown RBP13.57□□□□□ -0.24
SHMT2-214ENST00000554604 GPBP1Q86WP2 473 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 PDILTQ8N807 584 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 IQUBQ8NA54 791 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 MLKLQ8NB16 471 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 SPIRE2Q8WWL2 714 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 SUSD6Q92537 303 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 RABGGTAQ92696 567 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 DHX58Q96C10 678 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 KLHL5Q96PQ7 755 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 ACO2Q99798 780 aaKnown RBP13.57□□□□□ -0.24
SHMT2-214ENST00000554604 HERC2P3Q9BVR0 1158 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 CCDC94Q9BW85 323 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-214ENST00000554604 S1PR5Q9H228 398 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 LARSQ9P2J5 1176 aaKnown RBP13.57□□□□□ -0.24
SHMT2-214ENST00000554604 ADAM28Q9UKQ2 775 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 C2orf16Q68DN1 1984 aa13.57□□□□□ -0.24
SHMT2-214ENST00000554604 NPHP3-ACAD11A0A0J9YXS1 232 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 CASTOR2A6NHX0 329 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 H0YCG3 227 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 PTGESO14684 152 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 ADH1AP07327 375 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 PRR29P0C7W0 189 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 PLCG1P19174 1290 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 MYL5Q02045 173 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 CACNB1Q02641 598 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-214ENST00000554604 HSP90AA2PQ14568 343 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-214ENST00000554604 KARSQ15046 597 aaKnown RBP13.56□□□□□ -0.24
SHMT2-214ENST00000554604 E2F4Q16254 413 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 USP41Q3LFD5 358 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 FUT10Q6P4F1 479 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 ELMSAN1Q6PJG2 1045 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 TAS1R1Q7RTX1 841 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 ZBTB33Q86T24 672 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 RNF135Q8IUD6 432 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 SLC22A17Q8WUG5 538 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 PAGE5Q96GU1 130 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 RIPOR3Q96MK2 946 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 NECTIN4Q96NY8 510 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 NTPCRQ9BSD7 190 aaKnown RBP13.56□□□□□ -0.24
SHMT2-214ENST00000554604 TARS2Q9BW92 718 aaKnown RBP13.56□□□□□ -0.24
SHMT2-214ENST00000554604 CDT1Q9H211 546 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 ADAM7Q9H2U9 754 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 TOPORSQ9NS56 1045 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-214ENST00000554604 CACNG4Q9UBN1 327 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 ODF2LQ9ULJ1 636 aa13.56□□□□□ -0.24
SHMT2-214ENST00000554604 SF3B1O75533 1304 aaKnown RBP eCLIP13.56□□□□□ -0.245e-8■■■■■ 37.4
SHMT2-214ENST00000554604 PDCD11Q14690 1871 aaKnown RBP13.55□□□□□ -0.24
SHMT2-214ENST00000554604 VWA8A3KMH1 1905 aa13.55□□□□□ -0.24
SHMT2-214ENST00000554604 FAM86C2PA6NEL3 165 aa13.55□□□□□ -0.24
SHMT2-214ENST00000554604 LOC730098B7Z3J9 87 aa13.55□□□□□ -0.24
SHMT2-214ENST00000554604 LILRB3O75022 631 aa13.55□□□□□ -0.24
SHMT2-214ENST00000554604 FAM13AO94988 1023 aa13.55□□□□□ -0.24
SHMT2-214ENST00000554604 HARSP12081 509 aaKnown RBP13.55□□□□□ -0.24
SHMT2-214ENST00000554604 COL9A1P20849 921 aa13.55□□□□□ -0.24
SHMT2-214ENST00000554604 MTHFRP42898 656 aa13.55□□□□□ -0.24
SHMT2-214ENST00000554604 MATR3P43243 847 aaKnown RBP eCLIP13.55□□□□□ -0.24
SHMT2-214ENST00000554604 CLCN4P51793 760 aa13.55□□□□□ -0.24
SHMT2-214ENST00000554604 OSTNP61366 133 aa13.55□□□□□ -0.24
SHMT2-214ENST00000554604 DSG1Q02413 1049 aa13.55□□□□□ -0.24
SHMT2-214ENST00000554604 MCM6Q14566 821 aa13.55□□□□□ -0.24
SHMT2-214ENST00000554604 ARSHQ5FYA8 562 aa13.55□□□□□ -0.24
SHMT2-214ENST00000554604 GLRA4Q5JXX5 417 aa13.55□□□□□ -0.24
SHMT2-214ENST00000554604 ATAT1Q5SQI0 421 aa13.55□□□□□ -0.24
SHMT2-214ENST00000554604 MPZL3Q6UWV2 235 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms