RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 FGF13Q92913 245 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 SECISBP2LQ93073 1101 aaKnown RBP11.69□□□□□ -0.54
VPS29-208ENST00000550267 BORCS6Q96GS4 357 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 CEP170P1Q96L14 293 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 KXD1Q9BQD3 176 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 SLC26A6Q9BXS9 759 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 OSBPL6Q9BZF3 934 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 DHX33Q9H6R0 707 aaKnown RBP11.69□□□□□ -0.54
VPS29-208ENST00000550267 PARD6AQ9NPB6 346 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 ZSCAN32Q9NX65 697 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 WRAP73Q9P2S5 460 aaPredicted RBP11.69□□□□□ -0.54
VPS29-208ENST00000550267 CACNG4Q9UBN1 327 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 FBXW11Q9UKB1 542 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 ADAM28Q9UKQ2 775 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 KMT2BQ9UMN6 2715 aaPredicted RBP11.69□□□□□ -0.54
VPS29-208ENST00000550267 NID2Q14112 1375 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 DOCK8Q8NF50 2099 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 CYP3A7-CYP3A51PA0A087WV96 503 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 CCL16O15467 120 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 CYP3A7P24462 503 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 QARSP47897 775 aaKnown RBP11.68□□□□□ -0.54
VPS29-208ENST00000550267 WDR4P57081 412 aaKnown RBP11.68□□□□□ -0.54
VPS29-208ENST00000550267 NLRP5P59047 1200 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 NTRK3Q16288 839 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 TSGA10IPQ3SY00 556 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 RTP2Q5QGT7 225 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 ZBTB41Q5SVQ8 909 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 Q6ZUG5 572 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 FERMT3Q86UX7 667 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 GPR65Q8IYL9 337 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 GSTCDQ8NEC7 633 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 FAM174AQ8TBP5 190 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 NELL1Q92832 810 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 BRF1Q92994 677 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 RTKNQ9BST9 563 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 PHF20Q9BVI0 1012 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 KLF16Q9BXK1 252 aaPredicted RBP11.68□□□□□ -0.54
VPS29-208ENST00000550267 RNF26Q9BY78 433 aaPredicted RBP11.68□□□□□ -0.54
VPS29-208ENST00000550267 NXF3Q9H4D5 531 aaKnown RBP11.68□□□□□ -0.54
VPS29-208ENST00000550267 POLIQ9UNA4 740 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 GIT1Q9Y2X7 761 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 NCOR2Q9Y618 2525 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 WDR87Q6ZQQ6 2873 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 OTOGLQ3ZCN5 2332 aa11.68□□□□□ -0.54
VPS29-208ENST00000550267 MIA3Q5JRA6 1907 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 MYH15Q9Y2K3 1946 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 TADA2AO75478 443 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 C8AP07357 584 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 ADRB1P08588 477 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 HNRNPA1P09651 372 aaKnown RBP eCLIP11.67□□□□□ -0.54
VPS29-208ENST00000550267 AKAP5P24588 427 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 AXLP30530 894 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 RFC5P40937 340 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 MAGEA9P43362 315 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 PFKPQ01813 784 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 CREMQ03060 361 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 PPM1LQ5SGD2 360 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 LIN9Q5TKA1 542 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 NOTUMQ6P988 496 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 RSPO2Q6UXX9 243 aaPredicted RBP11.67□□□□□ -0.54
VPS29-208ENST00000550267 TPRG1Q6ZUI0 275 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 EXOC8Q8IYI6 725 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 HASPINQ8TF76 798 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 TCP11Q8WWU5 503 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 CLDN23Q96B33 292 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 CCDC51Q96ER9 411 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 CDK15Q96Q40 435 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 CLSTN3Q9BQT9 956 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 PAAF1Q9BRP4 392 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 CSRNP2Q9H175 543 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 KLK14Q9P0G3 267 aa11.67□□□□□ -0.54
VPS29-208ENST00000550267 INO80B-WBP1J3KQ70 363 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 ASAP2O43150 1006 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 ADAM12O43184 909 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 SLC37A4O43826 429 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 TBC1D4O60343 1298 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 DKC1O60832 514 aaKnown RBP eCLIP11.66□□□□□ -0.54
VPS29-208ENST00000550267 HMGB1P09429 215 aaKnown RBP11.66□□□□□ -0.54
VPS29-208ENST00000550267 CTHP32929 405 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 GRIK3Q13003 919 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 KRT32Q14532 448 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 HSP90AA2PQ14568 343 aaPredicted RBP11.66□□□□□ -0.54
VPS29-208ENST00000550267 EMC2Q15006 297 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 LPAL2Q16609 132 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 CDR2LQ86X02 465 aaPredicted RBP11.66□□□□□ -0.54
VPS29-208ENST00000550267 ING5Q8WYH8 240 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 C22orf23Q9BZE7 217 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 TRIM6Q9C030 488 aaPredicted RBP11.66□□□□□ -0.54
VPS29-208ENST00000550267 PRMT8Q9NR22 394 aaPredicted RBP11.66□□□□□ -0.54
VPS29-208ENST00000550267 HCFC1R1Q9NWW0 138 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 DDX25Q9UHL0 483 aaKnown RBP11.66□□□□□ -0.54
VPS29-208ENST00000550267 GMEB2Q9UKD1 530 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 VAV3Q9UKW4 847 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 PCDHA4Q9UN74 947 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 PPME1Q9Y570 386 aa11.66□□□□□ -0.54
VPS29-208ENST00000550267 SF3B1O75533 1304 aaKnown RBP eCLIP11.65□□□□□ -0.54
VPS29-208ENST00000550267 ZBTB39O15060 712 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 NCAM2O15394 837 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 B4GALT5O43286 388 aa11.65□□□□□ -0.54
VPS29-208ENST00000550267 XYLBO75191 536 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms